Gene detail

Detailed information of HOLI00088.G25236 in Hydra oligactis

Genomic Location: HOLI00088:254312...315954
NR annotation: XP_047136744.1, dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00088.g25236.t1

ATGGGCGACTCGCAAGCAACTAATACAGCGTCTCATAAACTTGTTTCTGGTATTGCAGGAGTTCAATCTTTGCTTACTTTTGCAATATTAGCAGCGGCCTGGATTGTTGCTTTCTTCAGTCGTCTTTTTGCTATTGTCAGATTCGAGAGCATTATTCACGAATTTGATCCATGGTTTAACTATCGTGCAACACATCATCTTGTTGAAAATGGTTTCTATGACTTTTTGAACTGGTTTGATGACCGTGCTTGGTATCCCCTCGGTAGAATTGTTGGTGGAACAGTTTATCCAGGATTAATGGTAACTGCTGGTGGTTTACATTGGCTTCTTAATTCTCTACACTTTACAGTACATATACGAGATGTTTGTGTTTTCCTTGCGCCATTATTTAGTGGATTGACTGCTATATCTACATATCTTCTTACAAAAGAATTATGGAGTGACAGAGCTGGTTTATTAGCTGCATGTTTTATATCTATTGCACCTGGTTATATTTCACGATCCGTTGCTGGTTCATATGACAATGAAGGAATTGCTATATTTGCTTTACAGTTTACTTATTTTTTGTGGATTCGAAGCATGAAAACGGGATCAGTATTTTGGTCGGTGTGCGCTGCTCTTTCTTATTTTTACATGGTATCAGCTTGGGGAGGGTATGTTTTTATCATTAATCTAATACCTTTGCATGTGTTTGTTCTGCTTTTAATGGGAAGATTTTCTAGCAAAATATTTACAGCATATAGCATTTTTTTCATCATCGGGCTACTTCTTTCAATGCAAATACCATTTGTTGGGTTTCAGCCAATTCGAACAAGCGAGCATATGGCAGCTGCAGGTGTATTTGCTCTTTTGCAAGCTTATGCATTCATTAAGTATCTTAGAGATAAAATGTCACGAAGTGAATTTTTTTACCTGTTTAATTTTGCAATTGTTGGTATGGCTGGAGTTGTCTTTTGTTCCGTAGTTGCTTTGACATATGCAGGCTATGTTGCACCATGGAGTGGTAGATTTTACTCTTTATATGACACTGGATATGCAAAGATTCACATTCCAATTATTGCTTCCGTATCTGAACATCAACCGACAACATGGGGAAAAGAAGATGAAGATGTACCTGTCAAAAAAACAGAAAATGAACCTGATAATGAAGTTCAAAATGGTGGAAGCCAATTAAAGATGATGGTTATTGCACTTATATTCACAATGTTTGTTTTGTATGCAGTTCATTGTACATGGGTCACAAGCAATGCATACTCAAGCCCTTCTATAGTACTTGCCACAAATAACTATGATGGTTCTCGTAACATTTTGGACGATTTTAGTGAAGCTTATTATTGGCTGAGACAAAATACTGCTGATGATGCACGTGTGATGTCCTGGTGGGATTATGGATATCAAATAGCTGGAATGGCGAATCGAACGACTTTAGTTGATAACAACACTTGGAACAATAGTCATATTGCATTAGTTGGCAAAGCCATGTCTTCAAACGAGTCTGCTGCATATGAAATTATGAGAAAACTAGATGTTGATTATGTTTTGGTCATTTTTGGTGGTGTAATAGGTTATTCTGGTGATGATATCAATAAATTTTTATGGATGGTGAGAATAGCCGAAGGAGAGCATCCTAAAGATATAAGGGAATCAGATTATTTCACTCCTCAAGGAGAGTTTCGTGTTGATAAAGGAGGTTCGCCTACTTTATTAAATTGCCTAATGTACAAACTTTGCTACTATAGATTTGGTGATCTGAGGTTGGATCATCGATCACCTTCTGGTTATGATCGCACACGCAATACAGAAATAGGAAATAAGAATTTCAAGCTCACTCATTTAGAGGAAGCGTTTACATCGGAGCATTGGCTTGTAAGAATATACAAAGTTAAGCCATTAGAGAGTCGAGTAAGTAGTACATTAAAAATGCGATCAACATCGATAAAGCAAACAAGACAAAAGTTTTATTCAAAGAAAACGCGTTCTGTCAGAAATGGTCAATTGAAAAATAAGCTTGATGTAAAAAAAGGATCGAGACCGAAGACTCTGTCCCGAAGTATATTTGGTAATTTTTTGAATTGTAAAAGAAAGCATGGAAAAGCAAAAGGAATTATGGGAAGAAAATCTTTTTGGATTGGTAAGAAGCATGATATCTTTGCTAACTTTTATTTGCCTATATTTTTCATCATACCTGCTTATCAATCATCTCAAGAAAAAGAGTCAAGAAGAAGGGTTTGGCTATGTTGCTTTACAATGGCTGTTTCTATAGGTGCAGTTTTGTTGCTGCCTTTCTCAATATTCAGTAATGAGATTCTTTTATATTATCCTAATAGCTACTATGTTATTTGGTTAAATGAGTCCTTAATTCACGCATTGTGGAACCAAATCTTTTTGGGAACATATATTGCCATGTTTTTAGCAATGCCATTTGCCTGGTTTTTTACTGAATCAGAAGGTTTTTCTGGATCAAAGAAGGGAATTCGTGCTCGTGTGCATGAGACATTTGTTGTACTTCTATTATTGCTAGTGTTAGCTTCAACACTTGTTTGGGTTTTTACTGCCTATTTTATGAATAAAGAAATGAGCTGGATTTCTAGTCTTTCTGGTGAGTTTTTTGTTGATCTGGACGATCAGATTCACGCTTTGCATTTGGAAGAAAATAATATAAGAAGAAAACTGAGTAGCCCTCTTAGTAATTTATCAAATGGAAATAATGGAATTTATCTTCAACAATATGGGGAAGCATACAAAACAAAAACTGTGATCCAAGATGTTATTCATGAAAGAATAAAACTTGGTTTCTTTATTAAATATTCAATTTTTTTATTTATTGATAAATAA

Transcript

HOLI00088.g25236.t1

Protein

Uniprot

Uniprot term	Description
E2RG47	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B OS=Canis lupus familiaris OX=9615 GN=STT3B PE=1 SV=1
Q8TCJ2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B OS=Homo sapiens OX=9606 GN=STT3B PE=1 SV=1
Q3TDQ1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B OS=Mus musculus OX=10090 GN=Stt3b PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02516	STT3	Oligosaccharyl transferase STT3, N-terminal	Domain	Interproscan
PF21436	STT3-PglB_core	STT3/PglB/AglB core domain	Domain	Interproscan
PF04082	Fungal_trans	Fungal specific transcription factor domain	Domain	Interproscan
PF04791	LMBR1	LMBR1-like membrane protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048307	Domain	Oligosaccharyl transferase STT3, N-terminal domain	Interproscan
IPR048999	Domain	STT3/PglB/AglB, core domain	Interproscan
IPR003674	Family	Oligosaccharyl transferase, STT3 subunit	Interproscan
IPR008075	Family	Lipocalin-interacting membrane receptor	Interproscan
IPR007219	Domain	Transcription factor domain, fungi	Interproscan
IPR006876	Family	LMBR1-like membrane protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13872	DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0004576	Molecular Function	oligosaccharyl transferase activity	Interproscan
GO:0004579	Molecular Function	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	Interproscan
GO:0006486	Biological Process	protein glycosylation	Interproscan
GO:0018279	Biological Process	protein N-linked glycosylation via asparagine	Interproscan
GO:0043687	Biological Process	post-translational protein modification	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07151	STT3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase	EC:2.4.99.18	Glycosyltransferases	ko01003	deepkoala