Gene detail

Detailed information of HOLI00089.G23967 in Hydra oligactis

Genomic Location: HOLI00089:712411...836423
NR annotation: XP_047146342.1, nischarin [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00089.g23967.t2

ATGAATAATTTGCACATAAAAGACTTGCACGAATGGGATAGTTACCCTCAAAATTTTCACGAAAACATGGTCTCAATTGCAGAAGCAGTATCCTCATCACCAGAACTATACTTCAAATCAGCATCAAAGAAAAAAAATGATAAAGAAAATATTAGGGATGAAGCGGAAATATTAACACAACAAATTCAAGACTCTAGATTAAAAATTAAAGAAATATATATATCCGAATGGTCTAAAAAAGATGAATACATTGTGTACAAAGTTGAAGTTCATATACCAGATCTTAGTTGGTGTGTATTCAGAAGGTATAATGAATTCTCAAAGCTTCACGAAAAGTTAGTTCAATTGTTTGGAATACCCAATGAATTGATACCTCCAAAGAAAATAATTTCTAACCAAGATCCAGATTTTATAAACGAAAGAAGAAAACTTCTTGAGAAATACCTGAGAAACTTAATAAATACTTTTCCAAACTTACCTACAGTTTTGGAGCGGTTTTTAGAAATGGAAAAGTTTGATGTGCATAATGTTTGTCATCAGTTAGCAATTGATGTCTTCAATATTGGGAACTATGTGCTATTAAAAAATAAAGTTTTCAAGATGAACTTGATACAACTTCATGCAATAAACAGAAGTTTAACACTTCCTTTATCAATAAGCGACGATAAAAGAGCTGACATTGGTAATTTATATTCTTTTGTTCAAAATTTGGAAAAGCTTTTGATTTATCCTGGAATTCTTAATAAAGTTTTTATTGGTCAGAAGGAGCTTCAATGCAATCTTAATATTTTCAGAGCTTTAAAATACCTTGTGATTCATGATTGCGATATAAAACTTTTGCAAGGCATTGGACATCTACAAGAATATCTAGAGGAAATATTTGTTCACAATTCAATTAACTGTATTCAGGATATAGCACTGAAAAATGTTAATTGGTTGCAAGTCTCCTCTAGTAACGAATCAAGCCAAGAGATGGACTGCCAATTTTTTCCGTGGATCATGTTAAAAAAAGCTACATTTAGCTATAACAATATACTCAATCTGGATTCTTCTTTAAAAATGTTTCCATCACTCACACATCTTGATTTAAGTCATAATAATATAACAGAAGTAAAGCATCTTGAGGATTTACTTTGTCTAACTAATCTAGATCTGTCATTTAATGTAATTCGTAATGTGGACGAGTTTTCCTACAAATTACCATGTATAACATCATTAAACATTTCCTCTAACCAGCTTACATGTATTGGAGGGCTCGAAAAGTTATATTCTCTTGAAAAGCTCAATGTTTCTCGAAATCAGTTGATGAAAATAACAGATGTTCTTTTACTTGGAAAATTACCTTTACTACATACATTATTAGTACACAATAACCCGTTCACAGATGTTCACAATTACAGAGATATGATATGGGCATCATTTTCCAGACGAGCATTTGAGGTATCATTAGATGGATGTATCCCAACAAAAAAGGATCTCCAAAAGATTTCTAAAATATTGGACACAGAAGAACAATATGTTGTGATTGAAGAAAATATTATTTCACATCATCAGTTTTCTGAAGCACCAATGATTTCTCCTAATGACGATTTAAAGTTGTTTGCATCAAAGGATCACATTGTAAACATTGCTCAATCTAAAAACAAGAACTCAAATTTATCTGATAAAGAAGATGCTGATGATGTGATTTTACGTGAACAGATTGAAAAACTACGTTTACAAGCTGGTGATTCATGGCTTACAATTTATAATGAAATGCTGGATTCAAAAAGATCGTTAGAGCATGACAAAGCCACAGATGGTAAGGAAATGGTATATGGTAAAGAATCACTTCATTGCAACAAAGAGAGTTTACCTCCATTTACTACTTCGAATATAGAAAATGAGATTGGATTAGAAGATGAACGTAAAAAAGAAAAAGAACAATATATCCATTCATGTGTTAATCCGTTTTATTCAAAACCTGAGGATGGAGAATTTATACAAAGTGTTATTCAACGTTGA

Transcript

HOLI00089.g23967.t2

Protein

Uniprot

Uniprot term	Description
P57768	Sorting nexin-16 OS=Homo sapiens OX=9606 GN=SNX16 PE=1 SV=2
Q5R6Q7	Sorting nexin-16 OS=Pongo abelii OX=9601 GN=SNX16 PE=2 SV=1
P57769	Sorting nexin-16 OS=Rattus norvegicus OX=10116 GN=Snx16 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00787	PX	PX domain	Domain	Interproscan
PF12799	LRR_4	Leucine Rich repeats (2 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036871	Homologous_superfamily	PX domain superfamily	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001683	Domain	Phox homology	Interproscan
IPR025875	Repeat	Leucine rich repeat 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15454	NISCHARIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24095	NISCH; nischarin	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala