Gene detail

Detailed information of HOLI00095.G45251 in Hydra oligactis

Genomic Location: HOLI00095:658196...694878
NR annotation: XP_047134367.1, sodium bicarbonate cotransporter 3 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00095.g45251.t1

ATGAGTAACCAAAATCTTTCTGGCGGTGTTTATGAAATATCTAAGTTACCTGTCGAAGAGAGAGAAATTGATGTTGCTGAGAGTTTTGCATCACACCTCTTTGAATATCATCAAATGAACAATGCAGATGTTAATAGACATTCTGATAAAAATGTACGTATCTTGAATGGAAGGCAGAAAATAAATGTTGCACCTTTAAAATCTCTTCGTTGGCAAAATGGAAACACAACTCAAACTTTAAATGAAGATTCATCTGAAGATGATAATGATGGTGATGATGAAGGTGAACAAGCTCCCCAGACATCTGCTTCTGAGAGAGTGAAATTTATTTTGGGTTACAATGATAAAGATGATAAACCTCTTCCTGAGAATCCTCAGCTTTTTACAGAACTTGAGGAGTTATTTGTATATGTTGATGGTAACGAAGAATGGAAAGAAACAGCACGATGGTTTAAATATGAAGAAGATGTAGAAGAAAGCGGAGATAGATGGAGCAAACCGCGCGTTGCAGCTATTTCACTTTATAGCTTATTAGAGCTAAGGAGTTCTTTAATGGCTGGTACAGTAATTCTTGATATGGATGCAATTACACTACCAGACATAACTAGCAATCTCCTAAGCAATCTTGTATCGAGTAACAAACTTGATGAGTGTGTTAAAGATAAAGTTCAAGAAACGCTTCTTCGCAAACATCATCATCACAAAGATATCAGTTTTAGAAGAAATCTCAGTAACATTATAAGTAGACGATCATCACGACAAATACATAATAATATATCATTATCTAGCAAGTTAAACCTTTATGCAAATTTACCTTCTGCTCAGATGAAAATATTTGACAGCCACTCAGATGTTTCTTCAGTTCAGATAAAAACATGTCATGACAATGACACATGTAAAGAATTTTCTTTAACAGAAACTCAGAATCATAAAAAAAGCTATCCAAGTTTATCTCATACAGTAACTGAATCAAGTTTTATATCAGTTTGTAATCAAAGGGTCTCAATACAGGGTCATCTTGTTTATCCTTCTCCAAGTGACTCTGATGCCGATACAAATGACAAACCATCTCGCTTGAAGAATCTACTTTCGCCTAATGCTGAAGCATCTAGTATTTTAGTTGGTGAAGTGGATTATTTATCACGGCCTATCACAGCTTTTATTCGCCTGCATAATAGCTCGCTTATAAGAGATCTTACAGAAGTTTCAATTCCTACTAGATTTTTGTTTGTTATGCTGGGACCAAGACTGATTAATGGCAATTATCATGAAATAGGGCGTGCAATATCCACCTTGATGTCAAATGATATTTTCCATGATGTGGCATACAAAGCAAAATCTAAAGAAGACCTTATCACAGGAATTGATGCATTTTTAGAACAGGTCACTGTTCTTCCACCTGGGAATTGGGATATATCAGTCAGAATGGAACCACAATTGAACAATCAACACAAAGAATCGAAGCGGTTGTTTTCAGAATCAAACAAGGCAGAAATTTCCATTGAGCAACTTGGAAGTGTTGGTTCTACATCCTTAGCCTCTGATTTAGCAATGGAAGATGGTAGCTTGAACACAGGAAAGCACTCATATATTGGAAGACTGTGCGGTGAATTGGTTTCTGATTTGTGTGCAAGGAAAAAACGTACAAATGATATTAGAGATGCGACAATTGGCGAACATGAGAAAAAGATAACTAATAATTCTATAGGTGTGCGTGAACATTTGTTATCGTTTGGTATTAATGGCTTACTATTTGCTTTGTTCAGTGGTCAGCCTATGTTGGTTATGTGTTATACCCTCCCTATCATGGTATTTGATAAGCTTTTGTTTCTAGTTTCTCAAGACTTAGAATTTGAGTTCTTATCTATAAGACTATGGGTTGGGATATGGACTGCTATTTTAATAATAGGTGGTGTTATACTTAATGTTTCAACTTGCATTCAATATTTGACACAGTTTACATTAGACATTTTTGCTGTTGTACAACCACTGGTTTTACTAGGGTATGTTGCATATTATATAAGCATCGTGATTGTAGATATATCGCTTAGTCCTGGTATGTTTGTTAATCAAAGCTGTTTCTGCTTACATAACTATTCTGATGTTATGAACATAAATTTTATAAACAAATCTGAGATTGTGGACAATATACATTTTCGTGATTGCGTTGGTAACGGTATGAAACTAATTGGCAATGCTTGTAATCACGGTGTTTCTTCACTTACTTTGCTTGTTATTGTGGTATCTATTTTTTTATTGTTTCTTTTGGCATCTTTTCAGCATTTTGGCTGCTTTCCTAAATTGGTTCACAGATTTCTGCATGATTTTTCAACTCTGATCACCGTTTTTGTGGCGTCGATGTTTGTAAATCAGTTTTCGATTAATATTTTGTATTTGCAAGTACCAAAACATTTTTATCCTGAAGGTGCTAGAACATCTTGGATTGTACCCTTTTTTGGTTCCAATCAGGTTTGGAGCATATGCGTTGCTATCATTCCTGCAGTATTTTTTACGATCTTAATATTTAGCGAGCACCAGCTTGCTAGCTACTATATACAGAAACAGTTTATACTCAAGAAGAGTTGTGGCTATCATCTTGATCTTCTTGTTGTAGCCTTTGGTGTCCTATTATCTTCCATTCTTGGCCTACCTTTTACAGTGACATCTGTTATATTATCTGTCAATAAGATAAGATCTTTAATTGTTATTAAGCCATCAATAAATCATTATGGAGGTTATAAGGAAATCAGGGAGCAGCGAGTCACCTCTATGTTGGTTTGCTGTCTTCTACTACTAACTCCTGTACTGCAGCCTATGCTTAAACTCATACCCTTATCTGTTCTCAATTCAATATTTATAGTGGCAATGTGTAAAGTTTTCATCGGTAACAATTTTGCAAAGCGTTTCAAGTTTTTGTTTGTTTCCAATCATCAAGATGAAGAAGCCTATTTGCGACAAGTTCCACTAATTAGTACCAATATATTAACTTTAGTCCAGACAGTGTGTGTTGCTGTTTTGTGTGCAGTGCGAGCATCGATTGCTGCTTTTTCATTCCCTTTTGCAATTATCTTCGTTATGGTGGTTCGTTATGTACTTGAGTTTATATTGCCTGAACAAGATCTCCAGTTACTTGATGGACCTAGGCTTCGATTTTCTTGTTTTCAAAGGAAATCAGACAGTTACTCCCATTTAATATTAGATTCAGAGCAAGGAATTGGTTTGGATGCACAGGATTGTGGTTTACTTTCTCATCCAAATAAAATGATTATCGATATTGGAGACGAGTTAGCGAAAACAGCGGCGTGGAAGCAGCTCACATGTAACAACACAAATTTATTAGATTCAAAAAACTTTCCAAATGCAACCAGTGGCGAAAGTGGTTCCAGAAGGCGTAGAAGACGAAGCCGTGGTTCTCTAAACAAAAGTGTCAACATAAAGAAAAATAAAGAAGGAAAAGAATGTGCTGCGTTAAATAAGAATAATCGAACTTCCAAGAAAGATGTTTCCAAGAATTCAGAGTGTGAATATTTAAACGATACAAAATCCCAAGATGATATCTCAAACGATAAGCGTAGTAAAAAAAAAAGTAAAAATATGAAAGATCAATTACCTCCCTGGGAACAGCCTTTTGGCTCACCTCCAAGAAAAGATTTTGGTCTGCTAGAGATTTGTGAAGATTCTCTAAGCATTGACCCAGCTTGTACCAGAACAGACTCTCCTATTCTTGCTTGTCCTGTAATAAAAATTGAAAATCAGAAAGACCAAATAACAAATTTTCCCACACCAGAAACATTCGCTTTGAAATGA

Transcript

HOLI00095.g45251.t1

Protein

Uniprot

Uniprot term	Description
Q32LP4	Sodium-driven chloride bicarbonate exchanger OS=Bos taurus OX=9913 GN=SLC4A10 PE=2 SV=1
Q9XSZ4	Electrogenic sodium bicarbonate cotransporter 1 OS=Oryctolagus cuniculus OX=9986 GN=SLC4A4 PE=1 SV=1
O88343	Electrogenic sodium bicarbonate cotransporter 1 OS=Mus musculus OX=10090 GN=Slc4a4 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00955	HCO3_cotransp	HCO3- transporter family	Family	Interproscan
PF07565	Band_3_cyto	Band 3 cytoplasmic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016152	Homologous_superfamily	Phosphotransferase/anion transporter	Interproscan
IPR003020	Family	Bicarbonate transporter, eukaryotic	Interproscan
IPR011531	Domain	Bicarbonate transporter-like, transmembrane domain	Interproscan
IPR013769	Domain	Band 3 cytoplasmic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11453	ANION EXCHANGE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005452	Molecular Function	solute:inorganic anion antiporter activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006820	Biological Process	monoatomic anion transport	Interproscan
GO:0008510	Molecular Function	sodium:bicarbonate symporter activity	Interproscan
GO:0015701	Biological Process	bicarbonate transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0050801	Biological Process	monoatomic ion homeostasis	Interproscan
GO:0051453	Biological Process	regulation of intracellular pH	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0008509	Molecular Function	monoatomic anion transmembrane transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13861	SLC4A10, NCBE; solute carrier family 4 (sodium bicarbonate transporter), member 10	-	Transporters	ko02000	deepkoala