Gene detail

Detailed information of HOLI00138.G39923 in Hydra oligactis

Genomic Location: HOLI00138:217984...255727
NR annotation: XP_047144488.1, pre-mRNA-processing factor 6 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00138.g39923.t1

ATGGGGCGTCATTACCTGAGGTGGGTGATTCTCGAAATAAAAAAAGTTCGTAATCCAAGACCTGAAAAGTTCACACCTGTACCTGATAGTGTCCTCCGCTCTGCACTTTTAGCTGGTCAAACCTCATCTTCTGTTAACCCAATGGATCAATTTGATGGCTTGACTACACCTTATTCTGGTCTAGCAACTCCTGCTTCCGCTGATCTTGACTTGAATAAAATTGGTGAAGCAAGAAAATCTCTTGTTGGTGTTAAACTAGATCAGGCTTCTGATTCTGTTACTGGTCAAACTGTTGTTGATCCAAAAGGATATTTAACAGATCTGCAAAGTTTAACTCCAAGCTCTAGTGGTGACATTGGTGATATTAAAAAGGCCAGACTTTTGTTAAAATCAGTTATTACAACTAATCCAAAGCATGCACCAGGCTGGATTGCAGCAGCACGTCTTGAAGAAGTAACAGGTCATACACAAAAGGCAAGGAACTTGATTATTAAAGGCACAGAAGCATGTTCAACAAGTGAAGATGTTTGGTTAGAAGCTGTGCGTTTACAACCAGTAGATTTATCTAAAGCAGTTGTTGCTCAAGCTATAAAACATTTACCACAATCAGTTAGACTTTGGATTAAAGCTGCAGACCTGGAAACAGAGGTTGCTGCGCAAAAAAAGTTTTCAGAAAAGCATTGGAACAAATTCCAAATTCAGTCCGATTATGGAAAGCTGCATGTAGAGCTTTGGCTTGCTTTGGCACGATTAGAAACTTATGAAAATGCAAGGCGAGTGCTTAATAAAGCACGTGAAAATATTCCTACAGATCGTCAGATATGGATTACAGCAGCAAAATTAGAAGAAGCCAATGGAAACACTCCGCTAGTTGATAAAATTATTGAAAGAGCTGTATCATCTCTTGCTGCAAATACAGTGGAAATCAATCGTGAGTTATGGATCATAGACGCTGAAGAGGCTGACAAGGCAGGTTCTATATACACTGCACAATCCATTATAAAAACTGTTATTGGTGTTGGAATAGAAGATGAGGATAGAAAACACACATGGCTGGAAGATGCTGAATCATGTGCAGTTCACGGTGCATACGAATGTGCACGAGCTATTTACGCTTACGCATTGAAGACATTTCCAAATAAAAAGTCAATTTGGTTTCGAGCTGCATATTTTGAAAAGTCACATGGAACAAGGGAATCTTTGGAGAGTCTTCTTCAAAACGCTGTTAAACATTGTCCAAAAGCTGAAGTTCTTTGGTTGATGGGTGCTAAATCAAAGTGGATGGCAAATGATATACCTGCAGCGAGATCAATTCTTGCGTTAGCATTTCAAGCAAATCCTAACAATGAAGAAATTTGGTTGGCTGCAGTTAAACTGGAGTCTGAGAATAATGAAGATGAAAGAGCTAGACGGCTTCTTGCTAAGGCTAGAATGAGTGCTCCTACAGCAAGGGTTTATATGAAATCTGCAAGGCTAGAATGGGTTCTTGGGAATTACGCTGAGAGTAAAGCTTTACTTAAAGAAAGTCTTTCAAAGTACGAGGATTTCCCAAAGTTATGGATGATGCAAGGTCAGCTTCACGAAGAAGAAAAGGATTTATATGAAGCACAACAGGCATATAGAAACGGTACAAAAAAATCACCGACTTCTTTTCAACTCTGGATACTGCTAGCTCGTCTTGAAGAAAAACAAGGTAATATTACAAAAGCACGTTCTGTTCTTGAGCAAGCGAGACATCGTAATCCTCGTGTTGATTTGTTATGGCTTGAATCTGTTCGAATTGAGACACGTGGCGGAAATAAAGATTTTGCTAAATCTTTAATGGCCAAAGCTTTGCAAGACTGTCCCAATTCCGGGCAACTTTGGGCAGAAGCTATCTTTATGGAAACTAGGCCTCAACGAAAAACAAAAAGTGTTGATGCTCTCAAGCGATGCGAACATGATCCTCACGTTCTTTTAGCTGTATCAAAATTGTTTTGGAGTGAACGCAAACTCAACAAAGCACGCGAGTGGTTTAATCGCACTGTTAAAATAGATCCGGATTTTGGTGATGCTTGGTCGTATTTTTATAAATTTGAATTAGCACATGGAACTGAGGCCAATCAAAAATCTATAATGGAACGTTGTGTTAAATCTGAACCACGCCATGGCGAAATGTGGAATCTAATTGCTAAAGGCACAAAAAATTGGCGTAAAAAAACAGACGAAATTCTTCCAATAGTAGCGAGGACTTTGAAGCCTGTTGAAAATATGTGA

Transcript

HOLI00138.g39923.t1

Protein

Uniprot

Uniprot term	Description
Q91YR7	Pre-mRNA-processing factor 6 OS=Mus musculus OX=10090 GN=Prpf6 PE=1 SV=1
A1A5S1	Pre-mRNA-processing factor 6 OS=Rattus norvegicus OX=10116 GN=Prpf6 PE=1 SV=1
Q2KJJ0	Pre-mRNA-processing factor 6 OS=Bos taurus OX=9913 GN=PRPF6 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14559	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR045075	Family	Pre-mRNA-splicing factor Syf1-like	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR003107	Repeat	HAT (Half-A-TPR) repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11246	PRE-MRNA SPLICING FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000244	Biological Process	spliceosomal tri-snRNP complex assembly	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0046540	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12855	PRPF6, PRP6; pre-mRNA-processing factor 6	-	Spliceosome	ko03041	deepkoala