Gene detail

Detailed information of HOLI00150.G1997 in Hydra oligactis

Genomic Location: HOLI00150:182261...184311
NR annotation: WP_105261021.1, LysR family transcriptional regulator [Rhodoferax sp. TS-BS-61-7]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00150.g1997.t1

ATGGCTACCACCTCGACACGCAGCAGCTACACCTTGCCTCCCGCCACCGTGCAAGACTACGCGCGCCAAGGCGCCGTGGTGCTGCGCGGTGTGCTCACACCCGATGAAGTGGCCCAGCTTGCGCGCGGCATCGAACACAACCTGGCCCACCTGAGCCCGCTAGCCCTGGTGGCCAGTCAGGCCGATGACCCCGGCAAGTTCGTCGAAGACTTTTGCACCTGGCAGCACAACCCCGACTATGCCGATGTGATGCAGCACAGCGCCTTGCCGCGCGTGGCTGCGCAGCTGATGCAGAGCGACACCGTGCGCATCTACCACGACCACCTGCTGGTGAAAGAGCCCGGCACGCGCCAACCCACGCCCTGGCACCAAGACCAGCCCTACTACAACGTGAGTGGGCGGCAGAACGTGAGCTTCTGGATACCGGTGGACCCGGTGCCGCTGGAGAGCACGTTGCGGTTTGTGGCCGGCTCACACGCGGGCACCTGGTACATGCCGCGCACCTTTCGCGACCAGCAGGCCAAGTGGTTCCCAGAAGGCGCGCTGGCCGAGCTGCCACAGATCGACGCGCACCCGGAGCAGTTTGAACAACTGGGCTGGGCGCTGCAGCCGGGCGACGCCGTGGCCTTCCACATGCTCACGCTGCACGCCAGCAGCGGCGTGGGGCCAGGCACGCGGCGGCGCGTGTTCTCGGCCCGCTACCTGGGGGACGACGCGCGCCACGCGGTACGCAGCTGGCGCACCTCGCCGCCGTTCCCCGGCCTGGCGGACCGCCTGCCCGATGGCCGCATGGAGCTGCTGCCGCACGTGCGATTGCTGCGGGCGCTGGCGGCCGTGGCGCAGGCGGGCAGCAGCCAGCGGGCGGCCACCTTGTTGCATGTGGCGCAGTCGTCTGTCATCCGCGCCGTGCAGCAGCTGGAGGCTGCGCTGGGCAGCCCCTTGTTTGAACGCGGTGGGCGCGGCATGCAGCCCACGCCGCGTGGCCGCCAACTGGCGCTGCGGGCCACGCGGGCCTTGCAGTTGCTGGCCGATGCGGACCGGCATCGCACACGCAGTGCGGCAGTCTGGCACCACAGCCCGCTGGCGCTGGGCGTGGCTGCGCGCCACCTGCAGGTGCTGCAGGCGCTGGTGGACACGGGCAGCGAAGGGCGTGCCGCGCAGCAGCTGGGTGTGAGCCAGCCGGCCGTGCACCAAAACCTGCAGCAGCTGGAGCACATGGCCGCAGCGCCGTTGTTCATTCGCGCGCGCAGCGGGCTGCGGCTGGACGAGGCGGGCGAGGGCTTGCTGCTTGCCAGCAAGCTGGCGCAGGCCGAGCTGCGCCAGGCCGTGGACGAATGGCCGGAGCCCGGTGCGGCCCTGCAGGGGCGGCTGGTGATCGGCACGCTGCCGTTTTCCACCACCATGCTGCTGGCCCCGGCGGTGGAGCAGCTGCTGGCACAGCAGCCGCATGTGCAGCTGGTGCTGATCGACGGCACCTTTGATGCGCTGGTGGCACAGCTGCGCCATGCGGAGCTGGACTGCATCGTGGGCGCCTTGCGCAGCACACCGCCGTCGGCAGACCTGAGCCAGGAGGTGTTGTTTGAAGACCGCCTGGCCGTGGTGGCGCGTGCCGGCCACCCGCTGGCCCAGCGCCGCCGCTTGGGCTGGACGGCCCTGCGCGCCGCGCAGTGGGTCATGCCCATGCCCAACACGCCGGCCGAAAAGGCATTTGCACAAATGCTGCAGGCCGCGGGCCTGCCGCCAGCCGCCGGGCAGGTGCGGGCCAACAGCGCGCTGATGATGCAGGCCATGCTGCAAGACAGCGACCGCCTGGCCCTGATGTCGCCGCGTCAGGTGGCGCGCGAAATGGCGGCGGGCCTGCTGGTGGAGCTGCCCCTGCCGGTGCAACACGCGCCGCGGCAGATTGGCGCTATGTGGCGTACTGGCTACCTGCCCACACCGGCCGCAGCGCAGTGGCAGGGCATCTTGCGGCAGGTGGGGTTGGTGCTTGGGGATGGCCGGTAG

Transcript

HOLI00150.g1997.t1

Protein

Uniprot

Uniprot term	Description
P27111	HTH-type transcriptional regulator CynR OS=Escherichia coli (strain K12) OX=83333 GN=cynR PE=1 SV=5
P25545	HTH-type transcriptional regulator CbbR OS=Xanthobacter flavus OX=281 GN=cbbR PE=3 SV=2
Q8X4M5	HTH-type transcriptional regulator CynR OS=Escherichia coli O157:H7 OX=83334 GN=cynR PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03466	LysR_substrate	LysR substrate binding domain	Family	Interproscan
PF05721	PhyH	Phytanoyl-CoA dioxygenase (PhyH)	Domain	Interproscan
PF00126	HTH_1	Bacterial regulatory helix-turn-helix protein, lysR family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR000847	Domain	Transcription regulator HTH, LysR	Interproscan
IPR005119	Domain	LysR, substrate-binding	Interproscan
IPR008775	Family	Phytanoyl-CoA dioxygenase-like	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30126	HTH-TYPE TRANSCRIPTIONAL REGULATOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan