Gene detail

Detailed information of HOLI00150.G2437 in Hydra oligactis

Genomic Location: HOLI00150:676617...678263
NR annotation: WP_105260856.1, lipid A export permease/ATP-binding protein MsbA [Rhodoferax sp. TS-BS-61-7]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q21WN9	ATP-dependent lipid A-core flippase OS=Albidiferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) OX=338969 GN=msbA PE=3 SV=1
Q3SFZ6	ATP-dependent lipid A-core flippase OS=Thiobacillus denitrificans (strain ATCC 25259 / T1) OX=292415 GN=msbA PE=3 SV=1
Q47JR8	ATP-dependent lipid A-core flippase OS=Dechloromonas aromatica (strain RCB) OX=159087 GN=msbA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00664	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036640	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR011527	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039421	Family	Type 1 protein exporter	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR011917	Family	ABC transporter, lipid A-core flippase, MsbA	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24221	ATP-BINDING CASSETTE SUB-FAMILY B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan
GO:0034040	Molecular Function	ATPase-coupled lipid transmembrane transporter activity	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11085	msbA; ATP-binding cassette, subfamily B, bacterial MsbA	EC:7.5.2.6	Transporters	ko02000	deepkoala