Gene detail

Detailed information of HOLI00169.G42372 in Hydra oligactis

Genomic Location: HOLI00169:398274...438495
NR annotation: XP_047139605.1, dynein intermediate chain 2, ciliary [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00169.g42372.t1

ATGGTTAATCAAAACACATTTGATGAAATTGCTTATGATTTTAAATATTGGGAAGACGCTTCAGATGAATATCGAGAAAATGAAGGTACAGTGTTGCCATTATGGAAATTTTCATATAAAGGAACAAAGAAAATGACTGTAACAGCTCTCTCATGGTCTCCTAATTATGAAGACTTATTTGCTGTTGGTTATGGCTCATATGATTTTTTAAAACAAAGTACTGGAATTGTTTGCTTTTACAGTCTAAAGAATCCATCATTTCCTGAACGGATTTTTATGACAGATTGGGGTGTTATGTGCTTGGATATTCATCTTTCCTATTCAAATTTGGTAGCTGTTGGATTTTATGATGGTTCAATTGCTGTATACAACTTGGAAAGTAAAGAAGATAAACCAATTCTTATGACTGCAACAGAGTTCGGGAAGCATACGGATCCAGTGTGGGAGGTGAGGTGGCAAACAGATGATCTTGATGGAAACTTAAATTTTTATTCAGTATCCTCTGATGGAAGAGTTGTTTTGTGGACCATCATTAAAAGTGAACTGCAAAACACTGAAATTATTCAACTTTGGGTTGGCTCAAATTTTAGTGATGGATTTCAAGAATCAGATAAAAAAGTCCTAGGGTGCGGAACATGTTTTGATTTCCACAAAACAGTTGATCACTTGTTTCTTGTTGGTACAGAGGAGGGAAAAATACAGAAATGTTCGAAAGCTTACTCCAGTCATTATCTTAGCACTTTCAGTGCCCATTATATGGCAGTATATGCTGTGCGTTGGAATTATTTTCACTCAAAAATTTTTATGTCATGCAGTGCTGATTGGTCAGTAAAAATATGGGACCATACCTGCAGTGATGCTATTTTTGCATACAACTTGGGAAGTCCTGTTGGAGATGTAGCTTGGGCGCCATTTTCTGCAACTGTCTTTGCTGCAGTAACTGCTGACGGAAAAGTCGTCATTTTCGACTTGAATGTTAACAAATATAAACCAATCTGTGAACAGAAAATTGTTCAAAAAGGAAAGACGAAGTTAACCCATGTTTCTTTTAATAAAGTTCATCCAATAATAATCATTGGCGACGATAGAGGATGCGTGACATCAGTAAAGTTATCTCCAAACCTGAGAAAAGCTATAAAAGAGCGCAGCAAAGGACCAGAAAATGAAATTGCGAAATTCGATAAACTGCTGAGTTTAGCTCACGATCCATTCGATAATGTAGAAAGGTTTAAAATGAGTTCAAGGTCTATTGTAAACTCAATTACTTCACTTAAAACACTGGCAAATGTTCTTCATAAAGGTGCAGATAAGAAAAACAACATAATTTTACAGATATATGCGAAACCTGGAGCTAAAAAAAACAAAGTTACAGACATCTCTGTGGAATTTATCGGCGTTCAGATAGCAGCTCAGCCAAGCGATGGAAAAGCTAATGATGAACTTTTGTTGTATCTTAGTGAAGTATTCAATATTAAAAAAAAAAGATATTTGTTTGATTCGAGGTGGTACATCCAGAGTACTTTAAAAGATTTCACATGTGCAATACTCTTGATAATAGTTTATATCTTAAAGGCGTGGTTCAACTTTTTTTATGCATATCATAAAGAGTTAAAAAATGAAGTTGTTCTTCTAACAGGAGCATCGGGTGGCATTGGAAAATTATTAGCAACCAAGTTGGCTCAAAAAGGTTGTATTCTGATTCTGATAGATATAGACGAATTTGGCTTGGAAGAAATTTCTAAGGTTTTGAATGAGACAAATCATCTGCAAGTAGCATATCCATTTAAATGTGATATCACAAACTATGATGAGATTGGTTTGATTAAAAAAGCAATTGTTGATACCGTTGGTAACCCAACAATTATCATAAATAATGCTGGTGTTGTTGCAGGAAAGTATTTTCTTGATTTGAAACTAGAAGAAGTTAAAAAAACATTCGAAGTTAACATTCTTTCACACTTTTGGATTGTGCAACAGTTTTTGCCCCACATGTTGAAGATGAATCATGGACATATTGTAAGTGTTGCTTCCATTTTGGGATTAGACTCTTTTGCCGGCGTTTCAGAGTATGGTGCTTCAAAGGCTGCCGCTGTCAACTTCATGAAATCGTTGAGACAAGAAATTCGTTTGATAAATAAAACTGGAGTCCATTGTACAACTGTTCTTCCATTTTACACCGCAACAAACTTGTTTAAAGGTTTTACTTCACGTTTTAAAAATCTTTTTCTTCTGAACGAGTTAAAACCAGAATATGTAGCTGAACGAATTATTGATGCAGTTGAGCGAAATCAAACAACTTTGTATATACCCAGAATCCTTTACATCTTAGTTGCTCTTTTATCGATTCTCCCAGATAATTCATATGATGCGATGGCCGATTTTTTCAGAGTTAATCAATCAATGCAAACATTTATTGGAAAGAAAAAAAATGTATAA

Transcript

HOLI00169.g42372.t1

Protein

Uniprot

Uniprot term	Description
Q16959	Dynein intermediate chain 2, ciliary OS=Heliocidaris crassispina OX=1043166 PE=2 SV=1
Q32KS2	Dynein axonemal intermediate chain 1 OS=Bos taurus OX=9913 GN=DNAI1 PE=2 SV=1
Q8C0M8	Dynein axonemal intermediate chain 1 OS=Mus musculus OX=10090 GN=Dnai1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan
PF02594	DUF167	Uncharacterised ACR, YggU family COG1872	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR003746	Family	Protein of unknown function DUF167	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR050687	Family	Dynein Intermediate Chain	Interproscan
IPR036591	Homologous_superfamily	YggU-like superfamily	Interproscan
IPR020904	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12442	DYNEIN INTERMEDIATE CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003341	Biological Process	cilium movement	Interproscan
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0036157	Cellular Component	outer dynein arm	Interproscan
GO:0036158	Biological Process	outer dynein arm assembly	Interproscan
GO:0045503	Molecular Function	dynein light chain binding	Interproscan
GO:0045504	Molecular Function	dynein heavy chain binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan