Gene detail

Detailed information of HOLI00170.G59181 in Hydra oligactis

Genomic Location: HOLI00170:694516...761308
NR annotation: XP_047136189.1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00170.g59181.t1

ATGTCTTCATATACTTGTTTGTCCTGCAGTGTTAAGTTTATAAATGCTGACCTGCAAAGGATGCATTATAAAACCGAATGGCACCGGTATAACCTAAAAAGAAAAGTTGTAGAATTGCCTCCTGTCACTGAAGAAGAATTCTCAATTAAAGCTGCACTACAAACAAAAAAGAAAGAAACTAAAATCCAGGAAAGATCGATTTCTACATACTGTAAACTATGCAATAAAAGTTTTTCATCTCTAAATTCTTTTCAAAATCACGTACAATCAAAAAAACACCAAGACTTACTCAATAAAAATACCTTAACTGGTATTGAACAACATCACACAGATTTTGTTAAAGTTACTGAAAAAGTTGTGAACAAAGCTCCTAATACCTCAGTCCAAGTAAGTTTAGTTGATGAATGTGAAGATGACAGTGATGACTGGGAAGATATGAGTTCAGGTGATGAGATTGATAAAAATGATGTAGAGGAAATCAGTTCTCTAGAGTCTGAAGCAATTCCACCAACGTCTTGTTTGTTTTGTAATCATCAAAGCATAAATATTGAAAATAATCTTCAACACATGGTGAAGTCGCACAGCTTTTTTATACCAGACCTCGAATATGTAACAAATGTTGAAGCATTTTTGATATACTTAGGTGCAAAGGTTGGCGATGGTAAAATATGCTTACTTTGCAATACTCGCAGCAAACAATTTCAAACCATAAAAGCATGTCGAGATCATATGACTGATAAAGGTCACTGTATGATTAGTTGTGAAAGCAATGCTATGCTTGAGTTTGCTGATTTTTATGACTTCTCTTCTACATACCCTACCAGTGAAAATGTAGATGTTGATATGGAGTTGTCAGAGTCTGATACAAGTTTATCTGTTGATCCAGAAACACTAGAATTATTGTTGCCATCAGGAGCTCGAGCTGGTCATCGTGCCCTGAGAAAATATTATAACCAAAGTGTTGTAGAAAGGTTAGAACAGCCAAAACGTTCTCATGCAATGATCTTAGGGTTAGCAAACCATTATCGTGCTCTTAATATACAAAATGGTACACTGGCTGTTGCAGTTAGAAGAAAGCTTGAAGCTAAGAAAACAGAAAATAGAAATCGATTAAATTTCAACATGGCTGTTGGAGTTAGAGCAAACAAACTACAAACACACTTCAGGAAACAGAAGAACAAAAGAATCTCATTGAAGAGAAAAAAACAGATTGCGTTGCAAAAATTATTAGTTAAAAAACATTTAAATAAAGATAAGTTATTAAATCAATCATTAATTCTTCAATATTCTTCAATTTCTCCGAAGGTATCAACAAATGTTTTTCATGATAATCAAAATATAAATGTTGAAAATCATAAAAAGAGTCGTGAACAAAGTTGGTCAACGCCTCAACTGAAATCCCCGCCTTTTTCAAAACCGCCACTTTCAACAAGTTTTAGTCCCAAGTTAAAAAATCAGGGTGCTAATACAGTTAATTCTAATTTTAAAACAACTTTGGATTTTACTTCTAAAAAGAGTTCCTCTGAGTCACCCATTTTATCATTTTCTTCACCTCATTCTATCCTTAAGTGTCCCAACACCAATGAAAAAAAAGACACATTAAATATAAACATTTCTTCAAAAGATTTTTCAACTCAGTCAGTCATAAAAAGTTCTGGGCTAAATAGATTTCAAACGAATCAAAACACTACACAGAAATCAATAGTTTCCGAAGGTTTCGATGACATTTATCCTGCAACATTGGATAAAATATCCGTCGAGTTATCTTTTATTGTTAAATCTCCTATTTGGTTTCGATGCCAATGTTCTGATAAAAAACATAACAATGGAATCATTCGTCAAATTGCTAAAAGTATTTCAAGCAGCACATACGAACCGTCATCTGGATCATGGCTGTTTCATATTAAAGATCATCAAATCGTGAAGAGTTCATTTGAAAAGTCATTAAATGTTACGTTGAACGATATTCCGTCAAATGTTGTCAAAATGCTTCAGAAAGCGCATAGTAACAGCAAAATAAATAAAACTACTGATATAAGCAAAGTTGATTCAGACTTACTTGAAAAACTGTTGCCATTCCAAAGAGAAGGAGTAGTATTTGGAATTGAGCACCATGGGCGCGTTTTAATAGCTGATGATATGGGCTTGGGTAAGACTGTGCAAGCTATAGCAATATGTTCGTATTACAGAGATAAATGGCCTGTGCTAGTCATTTGTCCTTCTTCAGTAAAAATGTCATGGAAGCAGCATTTCAGTGATTGGCTTCCCTCGTTAACAGAAGATGAAATCAATATTGTAAGCACAGGAAAGGAAGATCCTTGCAAAGGCCAAGTGAACATCATTAGTTATGATTTAGCTTCAAAGTTATCTAGTTATCTTACTCAAAAGTTTAACGTCATTGTTATGGACGAATCACACTTTCTTAAAAGTCATAATGCATCGCGTACCAAAACATTCTTCCGTTGCTGCAGGTTTCAAAACATATTGCGATATTGTAACGCAAAAGAAACAAAATATGGTTGGGATGATAATGGAAGCTCAAACTCTGAAGAATTAAGTGCAGTCTTGAGCAGTACAATCATGATCAGGCGGATGAAATCAGAAGTGTTAGATCAACTTCCTGAAAAACAACGACAAATTGTTCTTTTGGATCCTTCTTTTGTTGAATGCTCAAAAAAATTGCAAAATTCTTGTCAATATTTTGTCAATTCCCAGAAAAAAGACAAGCGTACAGCATTGCTTGCATATTACCAAGATACTTCTTCTGCTAAATTAAACGGAGTCTGTGAATATATATCAGATAAACTCTTGATTGGTCAAAAGATAATTGTGTTTGCCCATCACATTAAGATGTTGGATGGAATTGAAGAGATTGTTCAGAAGAAGAATGTTTGTTCAATTCGAATTGACGGATCAACAAACTCTAAGCAACGTCAATTTTTAGTTGATGAATTTACTAACAACAAAGAATGTTTAATTGCAATATTATCTTTGACAGCAGCTGGAACAGGATTGAACATCAGTGTATCAAGCTGTGTCATATTTGCTGAACTGTACTGGAACCCTGGACAACTTATACAAGCTGAAGATCGTGCCTATCGTATTGGACAGAAAAATGCTGTTTCTGTAATTTATCTTGTTGCAAAAAACACAGCTGATGATTATATATGGCCGATAGTTCAAGAAAAACTTCATATTCTTACCAATCTTGGCGTTGGGTCAAAAGCTGGATTACACGGACAAACATCATCTTTCAAGGATAGTCGCCAGCGCCAAATTGAAGATTTTTTTTCACGAAATGTTACAAGACTGCGATGA

Transcript

HOLI00170.g59181.t1

Protein

Uniprot

Uniprot term	Description
Q498E7	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Xenopus laevis OX=8355 GN=smarcal1 PE=2 SV=1
B4F769	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Rattus norvegicus OX=10116 GN=Smarcal1 PE=2 SV=1
Q0P4U8	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Xenopus tropicalis OX=8364 GN=smarcal1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12756	zf-C2H2_2	C2H2 type zinc-finger (2 copies)	Family	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF12171	zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	Family	Interproscan
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR041661	Domain	ZN622/Rei1/Reh1, zinc finger C2H2-type	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR022755	Domain	Zinc finger, double-stranded RNA binding	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR003604	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45766	DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0031297	Biological Process	replication fork processing	Interproscan
GO:0048478	Biological Process	obsolete replication fork protection	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan