Gene detail

Detailed information of HOLI00175.G10850 in Hydra oligactis

Genomic Location: HOLI00175:120038...247258
NR annotation: XP_002162990.2, probable RNA-binding protein 19 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00175.g10850.t1

ATGGGAACTTGTGACTTAGACAGGCAAATAGAACAATTGCGAAGATGTGAAATTATTAAAGAGTCTGAAGTCAGAACATTATGTGCCAAAGCTAGAGAAATTTTAATTGAAGAAAGTAATGTACAAAGAGTCGATTCACCTGTTACTGTATGTGGAGATATCCATGGCCAGTTTTATGACTTAAAAGAGCTTTTCAAGGTTGGTGGTGATGTTCCAGAAACCAACTATCTTTTTATGGGGGATTTTGTTGATAGAGGATTTTATAGCGTGGAGACTTTCTTATTACTTTTAGCGCTCAAGGTTAGATATCCAGATAGAATAACATTAATTAGAGGTAACCATGAAAGCCGTCAGATTACTCAGGTTTACGGATTTTACGATGAATGCGTTCGCAAGTATGGTTCTGTGACTGTTTGGAGATATTGTACTGAAGTTTTTGATTACTTGAGTTTATCAGCCATTATAGATGATAAGATATTTTGTGTTCATGGTGGTCTTTCACCATCAATTACTACACTTGAGCAGATTCGTACATTGGATAGAAAACAAGAAGTTCCCCATGATGGACCAATGTGTGACCTTCTTTGGTCTGATCCAGAAGACAAACAAGGTTGGGGTGTAAGCCCACGTGGTGCTGGTTTTTTGTTTGGCAGTGATGTTGTACAGCAGTTCAATGTTAAAAACAATATAGAACTCATTTGTCGAGCCCATCAATTGGTGATGGAAGGATTTAAATGGCATTTTAATGAAACAGTGCTCACTGTATGGTCTGCTCCTAATTATTGCTACAGATGTGGTAATGTCGCTGCAATTCTTGAGCTAGATGAGCATTTAAAAAAAGATTTCACGATATTTGAAGCAGCACCTCAGGATATTAAAAAAGAAAGTGTTAAAGAATTATTTGAAAGTCAAGGTGGCGAAATAACAGATATAAAACTATGTTTTACAAAAGAAGGAAATTTCAGGAAATTTGCTTTTGTTGGATACAAAACAGATTCAGATGCATTAGCTGCTCTGAAATTTTTGAACAATACATTTATGGGTACGAGTAAGATTCATTTGGAGATATGTAAAGATTTAGGCGATCCATCAGTTCCTCGTCCTTGGAAACTACAATGCGGAAAAATTAATGAAACAAAATTTAAGAATGTTTTGAACAATAAATCAAAAAGTGAATTTGAGGATTTGGAAAATAATAATGAGTTTCAAGAATTTGTAGGAGTACATTTAAACAAAGGCATAAAGCAATCCTGGACAAATGATAGTATAGCTCATATCGAAGCCAAAGCTAAAAAGATTTTGGAAAAAAATATAGAAAAGTGCAATGTTAACAAGAATAATAGTGAACAATTTAATGAAGAAGGAATTAAAATAGAATCTGAAAAACACCAAGAAGAAAATGAGTTTGAGACTGAAAAATTCACTGAAGAGTGCTATGAAAAAGAACTCGTTACAAGTAAACCTGTGAAAAACAAGAAGGGAAAAGTTATTGAAGATAAATCTTCTGATTTAGAATGGCTAAAGTTAAAAACTATGCAATCTAAAGGAGAATCAACTGAATCTGAAGAAAAAACTGAAGAAACAGTAAATCGAGATTTAAATTCAGATAATGAAGAAAATGTTTTAAAAACATTTGATATCAAATCGAATACTATTAAAATGAGAGGAATTCCATTTAAATGTTCTGAAAAAGAAGTTATTAAATTTTTCAAACCACTTTATATTGATGATATACGATTTCCTAAAAATAAAGATGGAAAATCTAGTGGTTATGCATTTGTTGATTTTAAAACTATTGAAGATGTTAAAAGTGCACTGAAAAAAGACAAACAAAAGATTCAAGGAAGGTACATAGAGTTGTTTCCAGTAAATGATTCAGAAAATTTAAAACAGAATGATTTTGCTAAAAAGTGGAAGGCGGATGATGCAGAAGATATATCAGACACAGGGAGGTTGTTTGTTCGCAATTTATCATACACTTGCACAGAAGATAGTTTGACAAACTTATTTTCTCAGTTTGGACCATTAGTAGAAATAAATCTTCCAATCGATAAAAATTCAAACAAAACAACTGGGTTTGCTTTTGTAACGTTTATGATGGCAGACCATGCAATTAAAGCAATGTCCAAATTAGATGGATCAATTTTTGAAGGACGCATATTGCATATACTTCCTGGAAAATCTAAAAAGATCAAAGAAGAAGATAACGAATTAGCGCAAGCATCATATAAAGTAAAGCAAGAGGCTAAAAAGAAATCGGAGAGTCATAACTGGAATGCACTTTTTCTTGGGCAAAATGCAGTAGTTGATGTTATGGCAAATAGACTTAACAAAAGTAAACATGATATTCTTGATACAGAGTCATCTTCTAGTATAGCAGTACGAATGGCACTTGGTGAAACTGAACTTGTATCAGAGACCAGAGAGTTTCTTGAGTCAGAGGGTGTTAAACTGGATTGTTTTGGTCAGGCAAATTCGCTGCGAAGCAAAACAGTGATTTTGGTAAAAAATTTACCGCCGCAAACTCTAACCAGTGAACTACGGGAAATATTTTCGAAATATGGAGATCTTGGGCGTTTACTAATGCCTCCATTTGGGATAACAGCCATTGTTGAGTTTATACAATCTAAAGATGCAAAAAATGCGTTTAATAACTTGGCCTACTCTAAGTTTAAACACTCCCCACTTTATTTGGAGTGGGCACCTCTAGATGTGTTGGCTGGAGAAGTTACTAAAGAAAAAAAGGTTGAAGGTGCAGAACCTGAAGATGTGGAATCTGAAGATGAAATGAATGATGCTCAAGCTGTTATTTTTGTTAAGAACCTGAATTTTACTACTGCTGAAGAAAGGTTTAAAGAGTTTTTTTCAAGTTGTGGAGAAATCAAAAGTGTTACAATTGCTAAAAAGCAAGACCCTAAAAATCCATCAGCTATGTTATCGATGGGATATGGTTTCGTTGAGTACAAAAAATTGGAAGGGGCTGAAAAGGCTTTAAAGCTTCTTCAGCATTGTGAACTGGATAGTCATAAACTTGAGCTGAAAAAGTCTCATAGAGAATCAATTTTACCCAAAGTATCAAGAAAGCGTTCCAATGAGAAAAATCAAGTAAGCAGTAAGATGGTGGTTCGCAATATTCCATTTGAAGCTACTGTCAAGGAACTGAGAGAATTATTCTGCACGTTTGGGAACATAAAGTCTTTGCGATTACCAAAGAAAATAACTGGTGCTCATCGTGGATTTGCTTTTATAGATTTTACCACTAAACAAGATGCTAAACGAGCATTTAAAGCTCTTTGTCAAAGTACCCATCTCTATGGGCGTCGTTTAGTACTTGAATGGGCAGATGATGATGATAGTGTTGATTTATTAAGGAAAAAGACAGCTGAACTTTATCACGAATCTTCTGAACCTTCTGCAAAGAAGTCTAAAATGCAATTACAGAACGCACTTGAAAATACTTCATCGGATAGCTTGTAA

Transcript

HOLI00175.g10850.t1

Protein

Uniprot

Uniprot term	Description
Q9Y4C8	Probable RNA-binding protein 19 OS=Homo sapiens OX=9606 GN=RBM19 PE=1 SV=3
Q6IP91	Serine/threonine-protein phosphatase 4 catalytic subunit OS=Xenopus laevis OX=8355 GN=ppp4c PE=2 SV=1
Q6P861	Serine/threonine-protein phosphatase 4 catalytic subunit OS=Xenopus tropicalis OX=8364 GN=ppp4c PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00149	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR047129	Family	Serine/Threonine protein phosphatase PP2A-like	Interproscan
IPR034423	Domain	Probable RNA-binding protein 19, RNA recognition motif 5	Interproscan
IPR006186	Domain	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR029052	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR004843	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR034421	Domain	Probable RNA-binding protein 19, RNA recognition motif 6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45619	SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0004722	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14787	MRD1, RBM19; multiple RNA-binding domain-containing protein 1	-	Ribosome biogenesis	ko03009	deepkoala