Gene detail

Detailed information of HOLI00256.G40356 in Hydra oligactis

Genomic Location: HOLI00256:34173...35338
NR annotation: TXH93486.1, DEAD/DEAH box helicase [Rheinheimera sp.]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P9WH04	ATP-dependent RNA helicase DeaD OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=deaD PE=3 SV=1
P9WH05	ATP-dependent RNA helicase DeaD OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=deaD PE=1 SV=1
Q89AF9	ATP-dependent RNA helicase DeaD OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915 GN=deaD PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF03880	DbpA	DbpA RNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050547	Family	DEAD box ATP-dependent RNA helicases	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR005580	Domain	DEAD box helicase DbpA/CsdA, RNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47963	DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0009409	Biological Process	response to cold	Interproscan
GO:0033592	Molecular Function	RNA strand annealing activity	Interproscan