Gene detail

Detailed information of HOLI00256.G40426 in Hydra oligactis

Genomic Location: HOLI00256:98532...99530
NR annotation: WP_031570592.1, diaminopimelate decarboxylase [Pararheinheimera texasensis]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q9KVL7	Diaminopimelate decarboxylase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=lysA PE=1 SV=1
P44316	Diaminopimelate decarboxylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=lysA PE=3 SV=1
P19572	Diaminopimelate decarboxylase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=lysA PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02784	Orn_Arg_deC_N	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	Domain	Interproscan
PF13627	LPAM_2	Prokaryotic lipoprotein-attachment site	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029066	Homologous_superfamily	PLP-binding barrel	Interproscan
IPR022653	Binding_site	Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site	Interproscan
IPR000183	Family	Ornithine/DAP/Arg decarboxylase	Interproscan
IPR022644	Domain	Orn/DAP/Arg decarboxylase 2, N-terminal	Interproscan
IPR009006	Homologous_superfamily	Alanine racemase/group IV decarboxylase, C-terminal	Interproscan
IPR002986	Family	Diaminopimelate decarboxylase, LysA	Interproscan
IPR002433	Family	Ornithine decarboxylase	Interproscan
IPR022657	Conserved_site	Orn/DAP/Arg decarboxylase 2, conserved site	Interproscan
IPR032831	Conserved_site	Prokaryotic lipoprotein-attachment site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43727	DIAMINOPIMELATE DECARBOXYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008836	Molecular Function	diaminopimelate decarboxylase activity	Interproscan
GO:0009089	Biological Process	lysine biosynthetic process via diaminopimelate	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0006596	Biological Process	polyamine biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K27001	GDAH, AGMAT; taurocyamine/4-guanidinobutanoate/3-guanidinopropanoate hydrolase	EC:3.5.3.- EC:3.5.3.7 EC:3.5.3.17	Arginine and proline metabolism	ko00330	deepkoala