Gene detail

Detailed information of HOLI00264.G3193 in Hydra oligactis

Genomic Location: HOLI00264:337622...340553
NR annotation: WP_265645771.1, type I polyketide synthase [Verminephrobacter aporrectodeae]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00264.g3193.t1

ATGCCATTGCCATTGTCGGGATGTGCGGACGATTCGCTGGAGCCGCAGATTTGGCAGCGTTTTGGGAGCATCTGTCCGCTGGCCGCGTGGCGCGTGAGACATATGGAACGGGACGAACTGATTGCCCGTGGTGTTGCTCCTGGATTGGTGGACGACCCTGCCTATGTTCCTGCAGGTATGCCGATGCATGGGGTCGCTGCGTTCGATTCCGAGTTCTTTGGACTTAGTGCCAAGCAGGCCGATTGGATGGACCCGCAGATTCGACTGTTCCTGGAGGTCTGTTGGCATGCCATGGAAGACGCGGGCTACGACGTTGGACGCCTTGGCCAGCAGCGCGTGGGGGTGTTCGCTGGTTCGAATCCCTCCGTTTATCTTTGGCAACACCACCTTGAGCGTCTGCGTGACCACAATCTCGCGCAATGGTTGGAGGTATTGACCGGCAATGACAAGGACTACCTGAGCACTTGGGTTGCGCATAAGTTGGGCCTGCGCGGTCCAGCCATCAATGTGCAGACGGCCTGCTCGACCTCCCTGGTGGCGGTGGCAACGGCTTGCCAGTATCTGCTTGGCTATCAGTGCGACATGGCGCTTGCCGGAGCCTCTGCGTTGACTTTGCCTCACGGACAAGGATACCTGTACCAGGCCAACACGATTCTGTCACCCGATGGTCACTGCAGACCGTTCGACGCCGATGCCGGAGGCACCATCATGGGCAACGGCGTGGCTGCTGTTGTACTCAAGCGGCTCGAGGATGCGCTGCGCGATGGTGATCGGATCGATGCCCTGGTTCTTGGCGCAGCGGTCAACAACGATGCGCAGCGCAAGATGGACTTCATGGCACCGGGTGTCGAGGGGCAAGCAGAGGTCATCCGGTTGGCGCATCGATTGGCCGGAGTGGCTGCCGATAGCATTGACTATGTTGAGGCTCACGGCACGGGTACGCGCCTGGGCGATCCCATCGAGATCAGGGCGTTGCAGATGGCCTTTGGTGCGGGGGCAAACCGAAACCGGCCCTGTGCCATTGGTGCCGTGAAGGGCAATCTTGGCCACTTGAACACTGCGGCGGGCATGGCGGGTTTGCTCAAGACGGTGCTGGCCCTCCGCCACGAGGCGGTGCCGCCCACGCCGCATTTCAAACGACATAACCCGCAACTGGCGCTGGATGACCGACAGTTTTTCATCAACGACCGACTGCTGCCCTGGCCTCGGGATGCGGCCCGACCGCGGCGAGCTGGCGTTAGCGCTTTCGGCTTCGGCGGTACCAACGCCCATGTGGTATTGCAGGAGGCGCCGTCGACGGAAGACCGACTGTCTCAGTGGCTGGCAGGTGCCGGTCGTACGGTGGCTCTGGACGATATTTGCTTCACTGCAGGCCGAGGCCGCAGAATCTTTGCCCATCGGCTGGCTGTGGTGGCCACCGACGTGGCAGAGCTGGCAGCGAAGCTCGCGCGCGCCGACGGGAAGGCCGCGACAGCTGGAGCCAGGGCTGCCTGGGTCTTTACCGGGCAAGGTGCGCAGTACGACGGCATGGCCTCGGGACTCTATGACGGCAGTTCTGCGTTCCGTCAAGCTGTTGATGCGTGCTGTGCAGCGTTGCCTGCAGGTTTGGACTTGCCGTTGTCGAACTGGATTTCCGGCAAGCCTCCGATGGGGCTGGCCCTAACCAAGGCAGCGACTCTGCAGCCTTTGCTGTTCACCGTTCAGTATGCGCTGGCTGGCGCGTGGGGCGAGACTGGCGCCAAACCCGACGTGGTGCTTGGTCACAGTCTGGGTGAGTATGTGGCGGCCTGCGTGGCTGGGGTAATGCCGTTGTCTGTGGCGATGGAGATGGTTTGCCTCCGTGGTCGACTGATCGACGGTCTTTCTGAAACGGGAGGCATGCTCGCCGTCAAAGCATCGCTCAGCGAGTTGCAGACGGTGTTGCGCGGCGGCTTCGAGTTGGATGTAGCCGCTGTCAATGCGCTCGACCAGGTGGTCGTTTCGGGGCGCGCGGAGGAGATCGACAGGTTGCATGACTCTTTGCGCATGGTCAGGATCGAGGCACTGCGTTTGCCGGTGACGCATGCCTTCCACTCGCGGCTGCTCGACCCCATTCTTGATGAGTTCGAGGCTGGCTTGGCAGGGATGGAGTTCAAGGCGCCGACGATTCCAATGCTCAGCAACCTGACGGGCAGCTTGCTCCGAGAGGCTCCGGACGCTCGTTACTGGCGCGAGCATCTGCGGCAGGCGGTTCAGTTCGACTCCATGGTGACGCAATTGCGAGCCATGGGAGTCGATCATGCATTGGAGATTGGTCCCAAACCTTTGCTTTCGGGATTTGTGGGTCGGGCTTTGCCACGTGGCTGTCTACCAGCCTTGGTCGAATCTGCGAAAGGCTATGAGACCTGGCTGCAGCAGGTGGGGCAAGCCTTTTGCTCCGGAATGCTCCCTGATGTGGGCGGGCTTTTCATGCAAGGGCGCCGGATCGCCTTTCCCGGCTACCCGTTCGCTGCGACGCACCATTGGGTCAATGCCACTGACGCGCCCGTCGGTGCGGTGCCCGTAGTGGCTGCTGGGAGCGGCTTGGTGCCGGATGCCAGCGCGGACAGTCTGCTCTACGACCTGATCGCCGGTTACTGGCGCATCGCGCTGGGTACTTCTACGTTGAGCCGAACCTCCGACTTCTTCATGCTCGGTGGAAATTCGCTCGCTGCGATCCAGATCCGGGCCGCCGTGCAGCGTGACCTGGATATTGACCTGCCTATGGCTGAGATGATGAAACTGCGCACGTTGGGTGAGGTGGTGGACGCCATCGGTTTAGCCCTAGAGGTCGCGGTTGAAGGTGAGGTCGGAGAGGAAAGCGAGGTGACATCGTGA

Transcript

HOLI00264.g3193.t1

Protein

Uniprot

Uniprot term	Description
Q7TXL6	Phenolphthiocerol/phthiocerol polyketide synthase subunit E OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=ppsE PE=1 SV=1
P9WQE0	Phenolphthiocerol/phthiocerol polyketide synthase subunit E OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=ppsE PE=3 SV=1
P9WQE1	Phenolphthiocerol/phthiocerol polyketide synthase subunit E OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=ppsE PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16197	KAsynt_C_assoc	Ketoacyl-synthetase C-terminal extension	Family	Interproscan
PF00109	ketoacyl-synt	Beta-ketoacyl synthase, N-terminal domain	Domain	Interproscan
PF00698	Acyl_transf_1	Acyl transferase domain	Domain	Interproscan
PF00550	PP-binding	Phosphopantetheine attachment site	Domain	Interproscan
PF02801	Ketoacyl-synt_C	Beta-ketoacyl synthase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050091	Family	Polyketide and Nonribosomal Peptide Biosynthesis Enzymes	Interproscan
IPR032821	Domain	Polyketide synthase, C-terminal extension	Interproscan
IPR018201	Active_site	Beta-ketoacyl synthase, active site	Interproscan
IPR001227	Homologous_superfamily	Acyl transferase domain superfamily	Interproscan
IPR006162	PTM	Phosphopantetheine attachment site	Interproscan
IPR014030	Domain	Beta-ketoacyl synthase, N-terminal	Interproscan
IPR036736	Homologous_superfamily	ACP-like superfamily	Interproscan
IPR009081	Domain	Phosphopantetheine binding ACP domain	Interproscan
IPR014043	Domain	Acyl transferase	Interproscan
IPR016039	Homologous_superfamily	Thiolase-like	Interproscan
IPR020841	Domain	Polyketide synthase, beta-ketoacyl synthase domain	Interproscan
IPR016036	Homologous_superfamily	Malonyl-CoA ACP transacylase, ACP-binding	Interproscan
IPR016035	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan
IPR014031	Domain	Beta-ketoacyl synthase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43775	FATTY ACID SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004312	Molecular Function	fatty acid synthase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006633	Biological Process	fatty acid biosynthetic process	Interproscan
GO:0071770	Biological Process	DIM/DIP cell wall layer assembly	Interproscan
GO:0004315	Molecular Function	3-oxoacyl-[acyl-carrier-protein] synthase activity	Interproscan
GO:0016740	Molecular Function	transferase activity	Interproscan
GO:0016746	Molecular Function	acyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12433	pks5; polyketide synthase 5	-	Lipid biosynthesis proteins	ko01004	deepkoala