Gene detail

Detailed information of HOLI00299.G46546 in Hydra oligactis

Genomic Location: HOLI00299:83992...84642
NR annotation: TXH93682.1, RluA family pseudouridine synthase [Rheinheimera sp.]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P0AA37	Dual-specificity RNA pseudouridine synthase RluA OS=Escherichia coli (strain K12) OX=83333 GN=rluA PE=1 SV=2
P0AA38	Dual-specificity RNA pseudouridine synthase RluA OS=Shigella flexneri OX=623 GN=rluA PE=3 SV=2
Q8FL93	Dual-specificity RNA pseudouridine synthase RluA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=rluA PE=3 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00849	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006145	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR006225	Family	Pseudouridine synthase, RluC/RluD	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR006224	Conserved_site	Pseudouridine synthase, RluA-like, conserved site	Interproscan
IPR050188	Family	RluA Pseudouridine Synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21600	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0000455	Biological Process	enzyme-directed rRNA pseudouridine synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06177	rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase	EC:5.4.99.28 EC:5.4.99.29	Transfer RNA biogenesis	ko03016	deepkoala