Gene detail

Detailed information of HOLI00353.G42839 in Hydra oligactis

Genomic Location: HOLI00353:111968...113142
NR annotation: WP_245612947.1, 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC [Pararheinheimera texasensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
B0TUZ2	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC OS=Shewanella halifaxensis (strain HAW-EB4) OX=458817 GN=rlmC PE=3 SV=2
A6WS34	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC OS=Shewanella baltica (strain OS185) OX=402882 GN=rlmC PE=3 SV=1
B8E5Q5	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC OS=Shewanella baltica (strain OS223) OX=407976 GN=rlmC PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05958	tRNA_U5-meth_tr	tRNA (Uracil-5-)-methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010280	Family	(Uracil-5)-methyltransferase family	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR030390	Active_site	RNA methyltransferase TrmA, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11061	RNA M5U METHYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0070041	Molecular Function	rRNA (uridine-C5-)-methyltransferase activity	Interproscan
GO:0070475	Biological Process	rRNA base methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03212	rumB; 23S rRNA (uracil747-C5)-methyltransferase	EC:2.1.1.189	Ribosome biogenesis	ko03009	deepkoala