Gene detail

Detailed information of HOLI00408.G54732 in Hydra oligactis

Genomic Location: HOLI00408:202512...272250
NR annotation: XP_047136568.1, FYVE and coiled-coil domain-containing protein 1 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00408.g54732.t1

ATGCAGAACATTTCTTCTACCTATTTTAAAGTAGAACAACTTTTAAGTGAAATTCAAGAACTAGTGGCAAGCATTCAAAATGTTTACTTTAAAGAATTGGTTCCACTTAATGATGACAATTTGCTAGTTCATAGATTATGCATGGCACTTGAAAATATTTTTCGATCTGGTGCTAAAGAAAAGTATAGTTTTACTGGTGCGAAAAAAGAATTTTGGAATTTCATTAGTGAAAGTTTGCCAAAGGAAGAAATCATTCGTTTTATCAATTCTATTTCTGATCTTAGAACTTACCAAGGTAAAGGAAGGGCATTTATTAGACAAGCATTAATGGAGAAGTGCTTGGCTGACACGCTTCAGTGCTGCATCATCAATGAAAAATTTATCAAAGATTACTTCGAAGCTGATTCAATTTTTCAAGATAAAACTCTTTTTGGTACTTTGATAAATTCTCTTTATGATTTAAATTCCATACCATTTAACCTTCCCTATAAAGGTTATGATTTGGATAGAAGTTGGCCTTCATTTTCCAGAAAAGCATTTTACGAGAAAAAAGAACAAGTTCACAATCAAGTTGCAGACCCTTTTTTGATTCTGAAAAATCATATAAATATGCTAGATGCCTTATTAAGGGACTGGGACAGTGGATATAAGCCAGAAAATCTTTTAAAAGTCTACAGTCATCCTTTAGAAGTTTCTATTGACATGCTAATGACTATACATTCTGAGTTGGTAAAATTAAAGCAAAGTTACCAAAAGTTAAATGAAGATTTTAAAAAATTAAACAATGATTTAAATGCTTTAGAAACGGAAAAGGTTTTTATACAATCAGAATCTGATTTCAAAATGAATCAACTACAGGAACATAATAAAGAAATAGAACAAAATCTTGTTCTTTCAAATAATAGGTTTATATTAAACCAATCAGAGCTATATGAATTAAAGTCTAAGAATGAAATGTTATCAGAGAAATGTAAGGTTCATGAAGAAAAGTTTGGTAAATCAGGTACAGCTGATGAGCTCACTAAAAAAATAGCTGACCAAGAAGAGCAAAATAAGACACTAAAATTAGAAGTAAGTAATTTTACAGATGAGTTAAAAAATCTCACAAATGAGTTAAACAAAAAAAATGAGACCATTGCAGTACAAGAGAAAGAGTTGTTAGTTTTGAGAAATATAAATGCAAAATCTGAACTTACACTCGAAGAGTTGATGAGAGATATCAAAGATCAAATTAAACTTCAAGAGAGTCATATTAATTTAAATGATAAAAGAGAATGTGATTTAAAAGTAATTATTCAAAGTTTAGAGAAAAAACTGGATGATGAATCTCAAAATAAAGAGTATTTAGAAACTTTATTAAAAGAGCATAAACTTAATTCAGAAAAACAATTACATAATATGTGGCAAGTATTTATTACGGAGATAATAAATTTGTTTAAGGCAGATATGAATATGGATCAAATTGATGATGTTATTAATTTTCATCGTGGAGAAGAATCTGCCTTAAAGATTATAAAAAAGGTTCGTGATCAGTTTGAAGCTTCTAAAATATTCAAAACTCAAGCCGAGGAATCTGCATTGCATCTTAAACTTGAACAGGCCAAACTAGAAAAAAATGTAATTGATTTGCAACAAGAAGTTTTAACATTTCAAAACCAAGTCAACAACCTAAATATGGAAGTTAGCATGTTGTATAAAGAAAAAAAAGTTGCTCTTGAAAATAATGCATTACTCAAAGCTGAGACACAAAATAATATCATTGATTTTGAGAGTTTCAAATCAAAGTGTGAATGTGAAGAGAATGCAAGAAGATCTCATGAAGATGTTTTAAAAAATGAGATACGTATACTTTCAGAAGAAGTTAAAAGTTTGGAATTTCATCTCAGCACAAAGGAAATAAAGTACAAAGATATTTTAAAGGAAAATGAAAGCTGCAAAGTTGACTATGAAAGGTGCAAAGTGGATTTTGAGAAGTTAGTTATCTCTTTTGAAAACATTCAAAACTTAAACAGCCTAAATTCAAAAGAAATTTCTTGTTTACAAGAAGAAAACAAACAAAAGTTCAATGAGATTTTAGATATGAAGTCAGAAATCGATGCACTTAAATCAGAATTAAAAACCTTTTACAAAGAAAAAGAAGATATTTATCAGTTATATGAAAAATGTAAAAAAGATTGTGATAGTTTAAGTATAGAAAAAACAAACGGTGAACATCAATATGAAGAAATAATACAACAAATTAAAAGTGACACTGATGATATGAAAGATCAACTTATAAAACTTGCTAAAGATAAGGAAGAACTTTGGGAGCAAAAAAATGCACTTGAAATTACGCTACAAACTAGAATTTCAAATCACTGGATAGATGATAAAGATGTTGAAAAATGTATGAACTGTTTGAAAATGTTTTCTATGGCTAACAGAAAGCATCATTGTCGGTTATGTGGTGGGATATTCTGTAAAATGTGTTCTAATGAAAGGATTCAAACCCAATTTAGCAGAAAAAAAGTTAGATGTTGTCAAACTTGTGTCTATCTATTCAAACATAAATGTCCATTAGCAGATGTTGCAGCAGATGATATTTCATCGGACACCAGTAGCATTTTTAATTTAACCAATGTCAGCTCCTCTACTGAAGAGGATACAGATGAGTTGTCTCCTGTTGGTGGTGCTGGTGGCTTTGAAGAACTAGACTTGACCAATGCCAATAGTTCAAAGATAATTAGTAAAAATACTGAGTTGATAAGTATTCTTGAGAATGACATCAAACAAACGGCCATTGTACCTGTTGTTCATCAAGATAATGATGGCCCTTCTGACATAATGGAAATTTTAATTATCGCTGGAACCCGATGTTTATTTCCACTAGTTGCTGGAAGTATAAAATTTGAGTTAGTTTGGGAATTTGAGTCATCTCCAAAAGACATAAGTTTTGGAATAGCCTATAAAGAAAATGAGCTGGTTTTGGACAATCAAGTCGAGACAGTTATACCTTTGTCACGTTACTGTTCACACCAACAAGTTGTTCATGGAAGAATGCGAATTGAAAAGCCTGGAATTTACATAATGATTTTTAGTAATTTATATTCAAGATTTTTATCTAAAAACGTGAAATATTCGTTTCGATTGTGTCCACTATTCACTGACTGCAAACGTTAA

Transcript

HOLI00408.g54732.t1

Protein

Uniprot

Uniprot term	Description
Q8VDC1	FYVE and coiled-coil domain-containing protein 1 OS=Mus musculus OX=10090 GN=Fyco1 PE=1 SV=1
Q9BQS8	FYVE and coiled-coil domain-containing protein 1 OS=Homo sapiens OX=9606 GN=FYCO1 PE=1 SV=3
Q3TYX8	RUN and FYVE domain-containing protein 4 OS=Mus musculus OX=10090 GN=Rufy4 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02759	RUN	RUN domain	Family	Interproscan
PF01363	FYVE	FYVE zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004012	Domain	RUN domain	Interproscan
IPR000306	Domain	FYVE zinc finger	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017455	Domain	Zinc finger, FYVE-related	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR037213	Homologous_superfamily	RUN domain superfamily	Interproscan
IPR036598	Homologous_superfamily	GOLD domain superfamily	Interproscan
IPR009038	Domain	GOLD domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46753	FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K21954	FYCO1; FYVE and coiled-coil domain-containing protein 1	-	Membrane trafficking	ko04131	deepkoala