Gene detail

Detailed information of HOLI00422.G58293 in Hydra oligactis

Genomic Location: HOLI00422:84422...168316
NR annotation: XP_047136917.1, uncharacterized protein LOC100200514 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00422.g58293.t1

ATGAGAATTGATTTAAATAACACATGCAAAGATATCCCTCCTAAAGAACGAACTGAATGTGGCTGGCCAGGAATATCAAAATCTGAGTGCTACCAGCGTAGCTGTTGTTTTGATAGCTCTATAGTGAATGTCAAATGGTGCTTTTTTCCAATCACATCTACACCTAAACCAGTTACATCAATTGCACCGTCAGTTCCAACAACTGCACCAGTATCTACAAATAAACCAGTTACATCACCTGCACCAATAGTTTCAACAGCAGCGCCAGAAAGTAACTGTCCTGTTGCACAAAACACGAATATCTATATTGGTCTTTATGCTGATAAAAAAAATGTTCCAAGAAAATTTGAATGGTCAGATAGTACACCTGTTTTGTACACTAATTGGGATCTTGGTGAACCTAACAATCTTTTTGGAAATGAGAACTGTGTAGTCATATGGAAATTGGGTGTTTGGAATGATGTTTCATGTGATAGCAAATTTTCTTATCTTTGTAAAAAAAAAGTTGTTATATCTACACCTCCACCTAAGGCACCACTAGTTTTACCAACATTTACAACACCAGTTGTACCAACTGCACCAGTTGTCACTTCTATACCTACATTTAAACCAGTTACACTACCGGGTTCATCACCTGCACCAGGTTCATCACCTGCACCAGGAAATGGACCTTGTTTGATTGCCGCTAATCTAGCAAAACAAAATTTTCTTGTTAGAGTCTTTGTACCAGATTGCGACCAAAATGGAGACTATAAACCTATGCAAGCTAATCCATCTACTGGTCATAGATGGTGTGTTGATGTGAAAACAGGTGTAGAAATTCAAGGAACTCGTGTTGGACCTGGCGCCAATGCTCCTGTCTGTGGGCCAGTTGAAAAAAATCAAAGACCACCTGCACCACCACCTGAACCAATTGCACCAGTGTATGCTTCGGATCCATGGTATGAAGCTCAAGAGGGCTCAATAAAAAACCTGTATTTTAAGAATGGTGTTCCAAATGTGGTTAAAGTTGCTCAAGCATTCTTTGGTGATCCATGTGTTGGAACCTTTAAATATCTTGAAGTGAAATATATTATTGAAAAGGTGCAAAAAAATCCAAATGTACTACCACCTGCACCAACACCTGTACCAACTGCACCAGAATACCTTATTGGAAATGTTCCTACTCCGTTAGTTAAAGGAAAGATAGTTGCTGAAATACCAAAGCTAGATAAAGAATACCTGAATGGTGTTCCAAATGTGGTTAAAGTTGCTCAAGCATGTGAAGGAAAGGATCTTACAATTGATAGTCAAGGCACTGGATTAATTAAAGTACTAGAAGCAAATTATGGTAGAACTTCTTCAAGCGTTTGTCCTGGTTCTAATGATCAGAACACAAAATGTAATCATCAACAAAAGTCACTTGAAATTGTTCAGAAATTATGCTCCTCTAAACCCTCTTGTACTGTTAGTGCTACTAATGCAGTCTTTGGTGATCCATGTGTTGGAACCTTTAAATATCTTGAAGTGAAATATATTATTGAAAAGGTTCATAATAGTCCAAATGTGCTACCACCTGCACCAGTTGTACCAACTGCACCAGACTACCTTATTGGAAATCTTCCTACCCCATTAGTGAAAGGAAAGATAGTTGCGGAAATACCAAAGCTTGATAAAGACTACTTAGTCTCATTTGAGAAATTATGCTCCTCTAAACCCTCATGTACTGTTAGTGCTACTAATGCAGTCTTTGGTGATCCATGTGTTGGAACGTTTAAATATCTTGAAGTGAAATATATTATTGAATCCGTTCAAAAAAGTCCAAATGTACTACCTCCAACACCAGTTGCACCAATAGTTGTACCAACTGCACCAGACTACCTTATTGGAAATCTTCCTACCCCATTAAATGGTATTCCAAATGCAGTTAAAGTTGCTCAAGCATGTGAAGGGAAGGATCTTACAATCGATAGTCAAGGCACAGGTGCTACTAATGCAGTCTTTGGTGATCCATGCGTTGGAACCTTTAAATATCTTGAAGTGAAATATATTATTGAATCCGTTCAAAAAAGTCCAAATGTACTACCTCCAACACCACTTGCACCAATAGTTGTACCAACTGCACCAGACTACCTTATTGGAAACCTTCCTACCCCATTAGTAAAAGGAAAGATAGTTGCTGAAATACCAAAGCTAGATAAAGATTACTTAGTCTCATTTGAGGTTAATCCAACTAAATTTGTTGCTGATCCATGGTACGAAGCTCAAGATGGCTCAATTAGAAACCTGTATTTTAAGAATGGTATTCCAAATGCAGTTAAAGTTGCTCAAGCATGTGAAGGGAAGGATCTTACAATCGATAGTCAAGGCACAGGGTTAATCAAAGTACTAGAAGCAAATTATGGTAGAACTTCTTCAAGCGTTTGTCCTGGTGCTAATGATCAGAACACAAAATGTAATCATCAACAAAAGTCACTTGAAATTGTTCAGAAATTATGCTCCTCTAAACCCTCATGTACTGTTAGTGCTACTAATGCAGTCTTTGGTGATCCATGTGTTGGAACCTTTAAATATCTTGAAGTAAAATATATTATTGAATCCGTTCAAAAAAGTCCAAATGTACTACCTCCAACACCACTTGCACCAACAGTTGTACCAACTGCACCAGACTACCTTATTGGAAATCTTCCTACTCCATTAGTAAAAGGAAAGATAGTTGCTGAAATACCAAAGCTTGATAAAGATTACTTAATCTCATTTGAGGTTAATCCAACTAAATTTGTTGCTGGTCCATCTTCAGGTCCATCTTCAGGTCCATCTTCAGGTCCATCTTCATGTCCATCTTCATGTCCATCTTCAGGTCCATCTTCAGGTCCATCTTCAGGTCCATCTTCAAACATTCGAGTTGAATCCGCTCAAAAAAGTCCAAATGTACTACCACCAACACCACTTGCACCAACAGTTGTACCAACTCCACCAGACTACCTTATTGGAAATCTTCCTACCCCATTAGTAAAAGGCAAGATAGTTGCTGAAATACCAAAGCTTGATAAAGATTACTTAATCTCATTTGAGAAATTATGCTCCTCTAAACCCTCATGTACTGTTAGTGCTACTAATGCAGTCTTTGGTGATCCATGTGTTGGAACCTTTAAATATCTTGAAGTGAAATATATTATTGAATCCGCTCAAAAAAGTCCAAGTGTACTACCACCAACACCACTTGCACCAACAGTTGTACCAACTCCACCAGACTACCTTATTGGAAATCTTCCTACCCCATTAGTAAAAGGAAAGATAGTTGCTGAAATACCAAAGCTTGATAAAGATTACTTAATCTCATTTGAGGTTAATCCAACTAAATTTGTTGCTGTTGAATCGGCTCAAAAAAGTCCAAATGTACTACCACCATCACCACTTACACCAACAGCTGTACCAACTCCACCAGTTGAATCCGCTCAAAAAAGTCCAAATGTACTACCTCCAACACCACTTGCTCCAACAGTTGTACCAACTACACCAGACTACCTCATTGGAAATGTTCCTACTCCGTTAGTAAAAGGAAAGATAGTTGCTGAAATACCAAAGCTTGATAAAGACTACTTAGTCTCATTTGAGCTTAATCCAACTAAATTTGTTGCTGATTGGCTTTAG

Transcript

HOLI00422.g58293.t1

Protein

Uniprot

Uniprot term	Description
P86179	L-rhamnose-binding lectin CSL3 OS=Oncorhynchus keta OX=8018 PE=1 SV=1
C0HK24	L-rhamnose-binding lectin ELEL-1 OS=Echinometra lucunter OX=105361 PE=1 SV=1
P22031	D-galactoside-specific lectin OS=Heliocidaris crassispina OX=1043166 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02140	Gal_Lectin	Galactose binding lectin domain	Domain	Interproscan
PF00088	Trefoil	Trefoil (P-type) domain	Domain	Interproscan
PF00086	Thyroglobulin_1	Thyroglobulin type-1 repeat	Domain	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000716	Domain	Thyroglobulin type-1	Interproscan
IPR017994	Family	P-type trefoil, chordata	Interproscan
IPR000519	Domain	P-type trefoil domain	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR036857	Homologous_superfamily	Thyroglobulin type-1 superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR018378	Conserved_site	C-type lectin, conserved site	Interproscan
IPR000922	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR043159	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan
IPR044913	Homologous_superfamily	P-type trefoil domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46780	PROTEIN EVA-1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0030246	Molecular Function	carbohydrate binding	Interproscan