Detailed information of HOLI00459.G54287 in Hydra oligactis

Genomic Location: HOLI00459:299891...303807
NR annotation: XP_047140879.1, DNA-directed RNA polymerase II subunit RPB1-like [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7T6X5DNA-directed RNA polymerase subunit 1 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=RPO1 PE=1 SV=2
P18616DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana OX=3702 GN=NRPB1 PE=1 SV=3
P36594DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpb1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04997RNA_pol_Rpb1_1RNA polymerase Rpb1, domain 1DomainInterproscan
PF04983RNA_pol_Rpb1_3RNA polymerase Rpb1, domain 3DomainInterproscan
PF04998RNA_pol_Rpb1_5RNA polymerase Rpb1, domain 5DomainInterproscan
PF04992RNA_pol_Rpb1_6RNA polymerase Rpb1, domain 6DomainInterproscan
PF05000RNA_pol_Rpb1_4RNA polymerase Rpb1, domain 4DomainInterproscan
PF00623RNA_pol_Rpb1_2RNA polymerase Rpb1, domain 2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007080DomainRNA polymerase Rpb1, domain 1Interproscan
IPR042102Homologous_superfamilyRNA polymerase Rpb1, domain 3 superfamilyInterproscan
IPR006592DomainRNA polymerase, N-terminalInterproscan
IPR038120Homologous_superfamilyRNA polymerase Rpb1, funnel domain superfamilyInterproscan
IPR007066DomainRNA polymerase Rpb1, domain 3Interproscan
IPR007081DomainRNA polymerase Rpb1, domain 5Interproscan
IPR045867FamilyDNA-directed RNA polymerase, subunit beta-primeInterproscan
IPR007075DomainRNA polymerase Rpb1, domain 6Interproscan
IPR044893Homologous_superfamilyRNA polymerase Rpb1, clamp domain superfamilyInterproscan
IPR007083DomainRNA polymerase Rpb1, domain 4Interproscan
IPR000722DomainRNA polymerase, alpha subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19376DNA-DIRECTED RNA POLYMERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0001055Molecular FunctionRNA polymerase II activityInterproscan
GO:0005665Cellular ComponentRNA polymerase II, core complexInterproscan

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