Gene detail

Detailed information of HOLI00504.G55280 in Hydra oligactis

Genomic Location: HOLI00504:322403...324091
NR annotation: WP_116552574.1, DEAD/DEAH box helicase [Pseudomonas sp. SDI]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P21507	ATP-dependent RNA helicase SrmB OS=Escherichia coli (strain K12) OX=83333 GN=srmB PE=1 SV=1
P44701	ATP-dependent RNA helicase SrmB OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=srmB PE=3 SV=1
B9XXL6	DEAD-box ATP-dependent RNA helicase RhpA OS=Helicobacter pylori (strain B128) OX=544406 GN=rhpA PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000027	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan