Gene detail

Detailed information of HOLI00504.G55324 in Hydra oligactis

Genomic Location: HOLI00504:382227...384290
NR annotation: WP_095156825.1, MULTISPECIES: acetate--CoA ligase [unclassified Pseudomonas]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00504.g55324.t1

ATGGCCAAAAAGACCGTCTTGTTACTACCAACGTCGAATGGCCGGACAGGCTCTGTTACAGTTAAAACGAGGTCATACAAAAACAACTATTACACCGAGGTAAATAAGATGAGTGCGGCTTCCCTGTACCCTGTTCGTCCCGAGGTTGCGGCGAATACCCTGACTGATGAGGCCAGCTACAAGGCCATGTATCAGAAGTCGGTGATCAACCCGGACGGCTTCTGGCGTGAGCAGGCTCAGCGCCTCGACTGGATCAAGCCATTCACCAAGGTCAAGCAGACCTCGTTCGACGATCACCACGTCGACATCAAGTGGTTTGCCGACGGCACCCTGAACGTTTCCTACAACTGCCTGGACCGTCATCTGGCAGAGCGGGGCGACCAGCTCGCAATCATCTGGGAAGGCGACGATCCTTCCGAGCACCGCAACATCACTTACCGCGAACTGCACGAGCAGGTCTGCAAATTCGCCAACGCCCTGCGCGGCCAGGACGTTCACCGCGGTGACGTGGTAACCATCTACATGCCAATGATCCCCGAGGCCGTGGTCGCCATGCTGGCGTGCGCCCGTATCGGTGCGATCCACTCGGTGGTGTTCGGTGGCTTCTCGCCGGAAGCCCTGGCCGGGCGCATCATCGACTGCAAATCCAAGGTCGTGATCACCGCTGACGAAGGTCTGCGTGGCGGCCGTCGCACGCCGTTGAAAGCCAACGTCGACGACGCGCTGACCAACCCGGAAACCAACAGCATCCAGAAAGTCATCGTGTGCAAGCGCACCGGCTCCGACATCAAGTGGAACCAGCACCGCGACATCTGGTACGAAGACCTGATGAAAGTGGCGGGCAGCGTCTGCGCACCGAAGGAAATGGGTGCCGAAGAAGCCCTGTTCATCCTCTACACCTCCGGTTCCACCGGCAAGCCGAAGGGTGTCCTGCACACCACTGGCGGCTACCTGGTCTACGCCGCCATGACCCATGAGCGCGTATTCGACTACCGTCCGGGCGAAGTCTACTGGTGCACCGCCGACGTGGGCTGGGTCACCGGCCACAGCTACATCGTCTACGGTCCGCTGGCCAACGGCGCTACCACGCTGCTGTTCGAAGGCGTGCCGAACTACCCGGACATCACCCGCGTGTCGAAAATCGTCGACAAGCACAAGGTCAACATCCTCTACACCGCACCGACCGCGATCCGCGCGATGATGGCCGAGGGTCAGGCTGCCGTTGCCGGCGCCGATGGTTCCAGCCTGCGTCTGCTGGGTTCGGTGGGTGAGCCGATCAACCCGGAAGCCTGGAGCTGGTACTACAAGACCGTCGGCAAAGAGCGCTGCCCGATTGTCGATACCTGGTGGCAGACCGAAACCGGTGGCGTGCTGATCAGCCCGCTGCCCGGCGCAACCGCCCTGAAGCCAGGTTCGGCGACCCGTCCGTTCTTCGGCGTGGTGCCTGCGCTGGTGGACAACCTCGGCAACCTGATCGAAGGGGCTGCCGAAGGCAACCTGGTGATCCTCGACTCGTGGCCAGGCCAGGCGCGTTCGCTGTACGGCGACCACGACCGTTTCGTCGATACCTACTTCAAGACCTTCCGCGGCATGTACTTCACCGGTGACGGCGCCCGTCGCGACGAAGATGGCTACTACTGGATCACCGGTCGCGTCGACGATGTGCTCAACGTTTCCGGCCACCGCATGGGTACCGCCGAAATCGAAAGCGCCATGGTCGCCCACCCGAAAGTCGCCGAAGCGGCAGTGGTCGGTGTACCGCACGACATCAAGGGGCAGGGCATCTATGTCTACGTCACCCTCAATGGCGGCGAAGAGCCGAGCGAAGCGCTGCGTCTGGAACTGAAGAACTGGGTGCGCAAGGAAATCGGGCCGATCGCCTCGCCAGACGTCATTCAGTGGGCTCCGGGCCTGCCGAAAACCCGTTCGGGCAAGATCATGCGGCGGATTCTGCGCAAGATCGCCACGGCCGAGTACGACTCGCTGGGTGATATCTCCACTCTGGCCGACCCAGGCGTAGTGGCTCATCTGGTGGAAACCCACCGGACCATGAGCGCCGCCTGA

Transcript

HOLI00504.g55324.t1

Protein

Uniprot

Uniprot term	Description
Q88EH6	Acetyl-coenzyme A synthetase 1 OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=acsA1 PE=3 SV=1
Q885K7	Acetyl-coenzyme A synthetase OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=acsA PE=3 SV=1
Q4ZQG8	Acetyl-coenzyme A synthetase OS=Pseudomonas syringae pv. syringae (strain B728a) OX=205918 GN=acsA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13193	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan
PF00501	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF16177	ACAS_N	Acetyl-coenzyme A synthetase N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011904	Family	Acetate-CoA ligase	Interproscan
IPR025110	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR000873	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR032387	Domain	Acetyl-coenzyme A synthetase, N-terminal domain	Interproscan
IPR042099	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR020845	Conserved_site	AMP-binding, conserved site	Interproscan
IPR045851	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24095	ACETYL-COENZYME A SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003987	Molecular Function	acetate-CoA ligase activity	Interproscan
GO:0016208	Molecular Function	AMP binding	Interproscan
GO:0019427	Biological Process	acetyl-CoA biosynthetic process from acetate	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006085	Biological Process	acetyl-CoA biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01895	ACSS1_2, acs; acetyl-CoA synthetase	EC:6.2.1.1	Lipid biosynthesis proteins	ko01004	deepkoala