Gene detail

Detailed information of HOLI00522.G16930 in Hydra oligactis

Genomic Location: HOLI00522:259510...262093
NR annotation: TXH94409.1, glutamate synthase large subunit [Rheinheimera sp.]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00522.g16930.t1

ATGGCGGTAGGCGCAGTTCACCATGCATTAGTGGACAACCAGCTGCGTTGTGATTCCAACATCATTATCGAAACCGCCGGCGCCCGCGACCCGCACCACTTTGCCGTGTTGGTGGGTCTAGGCGCGACTGGCATTTATCCGTTTCTGGCTTATGAGACCATCGAACAGCTGGTGGAAAAAGGCAATATCAACCTGACCGCGCGTCAGGCTGTACTGAATTACCGTAAAGGCATCAACAAAGGCCTGTACAAAATCATGTCGAAAATGGGTATTTCTACAGTGGCCAGTTACCGCTGTTCCAACCTGTTTGAGGCCGTTGGTATCAATAAAAATGTGATGCAGCTTGCGCGCCAACACCGTCTATACTGGCTGAAGCGTAAACCGCTGACGCACGGTGGTCTATTAAAATACGTGCATGATGGTGAATATCACGCCTATAACCCGGATGTGGTGCAGACCTTACAAAAAGCGGTACGTAGCGGCGATTATGAGGACTACAAAGCCTATCGTGATGTGGTGAACACACGTCCGGTCGCGCATATCCGCGATTTGTTTGTGTTGGATAAAGCCAAAGCCACGCCGATCGCGCTGGATAAAGTCGCACCGGCCGAACAGCTGTATCCGCGGTTTGACAGCGCTGCGATGTCGATTGGCGCCTTAAGCCCGGAAGCGCATGAAGCTTTAGCGATTGCGATGAACCGGCTCGGCGGTCGTTCCAATTCCGGTGAAGGTGGTGAAGACCCACGCCGCTTTGGTACGGAAAAGAACAGTAAAATCAAACAAGTGGCATCTGGTCGCTTCGGTGTGACACCGCATTATCTGGTCAATGCTGAAGTTATCCAGATTAAAGTAGCGCAAGGCGCTAAACCCGGTGAAGGTGGTCAGCTGCCGGGCGAAAAAGTTACCGCGGAAATTGCGCGGCTGCGTTATTCAGTGCCGGGCGTGACGCTGATCTCCCCTCCGCCACATCATGATATTTATTCGATTGAAGATTTGTCGCAGCTGATTTTTGACTTAAAACAAAGTCCAGGCGTAGGCACTATCGCCACTGGTGTGGCCAAAGCCTACGCTGACCTCATTACTGTGTCCGGTTATGACGGCGGCACTGGCGCCAGCCCGCTGACGTCAGTCAAATATGCCGGCAGCCCGTGGGAGCTGGGCCTTGCAGAAGTACATCAGGCCTTAGTCGAAAACGGCCTGCGTGACCGCGTGCGCTTGCAGGTCGACGGTGGTCTTAAAACTGGCCTCGACGTGGTCAAAGCCGCCATTTTAGGCGCCGAAAGCTTTGGTTTTGGCACAGGCCCGATGGTCGCGCTTGGCTGTAAATTCCTGCGGATTTGCCACTTAAATAACTGTGCGACCGGCGTTGCCACGCAGGACGCGACGCTGCGCCGTGATCATTTCAACGGTTTGCCGGAGATGGTGATGAACTACTTTAAGTTCATCTCTACCGAAGTGCGCGAACTGATGGCAGAGCTTGGTGTGAGCCAACTAACTGATTTGATTGGTCGTACTGATTTACTCGGCGTCAAATACAGCTCCGACAAACCGCTGTATTGCGTGCAGAACAACGACCCGTTTGATAATGGTCCATTAAACCAGCTGTTAGTCGAACGTTGTGCCGACATGGTCAAATTTAAGACCGGTGGCCGGCTCAATCTGGCAATCCGCAATACCGACCGTTCTGTTGGTGCCAAGTTGTCTGGCCTGATCGCCCGTACCCACGGTAATCAGGGTATGGCGACAGAGCCAATTGAAGTGCAGTTCAGTGGCACTGCCGGCCAAAGCTTTGGCGTCTGGAATGCCGGTGGCTTGCACCTGTCGTTGCAAGGCGATGCCAACGACTATGTCGGCAAAGGCATGACCGGTGGCCAACTGGCCGTGTATCCGCCAAAAGGCTGCAGTTTCACCAAAGACAACGCCACTATCGTCGGCAACACCTGTTTGTACGGCGCCACCGGCGGCCGTTTATATGCCGCAGGCCGCGCCGGTGAGCGTTTTGCCGTGCGTAACTCCGGCGCCATCGCCGTGATTGAAGGCACTGGTGATAACTGCTGTGAATATATGACCGGTGGTGTGGTGGTGGTTTTAGGCCAGACTGGCGTCAACTTTGGCGCCGGCATGACCGGTGGTTTTGCTTATCTGTATGACGAGCAAAACGATCTGGACCTGCGGGTGAACGGCGAACTGGTGGAAGCCCTTGATGTGAGCACACCTATTCTGCAGGAACATTTACGCAGTCTGATTCATCAACATTTTGAAGCCACAGGCTCCGAACGCGCGCATCAGATCTTGTCGTCGTTTCAGAGCTGTTTAAGTAAATTTAAGCTGGTGAAACCAAAAACCAGCGACGTTAACACCCTGCTGGGCCACCGTGCCCGCTCGTCCGCCGAGCTGCGGGTTCAGGCGATGTAA

Transcript

HOLI00522.g16930.t1

Protein

Uniprot

Uniprot term	Description
P09831	Glutamate synthase [NADPH] large chain OS=Escherichia coli (strain K12) OX=83333 GN=gltB PE=1 SV=3
E1V8I1	Glutamate synthase [NADPH] large chain OS=Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9) OX=768066 GN=gltB PE=1 SV=1
P51375	Ferredoxin-dependent glutamate synthase OS=Porphyra purpurea OX=2787 GN=gltB PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01645	Glu_synthase	Conserved region in glutamate synthase	Domain	Interproscan
PF01493	GXGXG	GXGXG motif	Family	Interproscan
PF04898	Glu_syn_central	Glutamate synthase central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002932	Domain	Glutamate synthase domain	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR036485	Homologous_superfamily	Glutamate synthase, alpha subunit, C-terminal domain superfamily	Interproscan
IPR051394	Family	Glutamate Synthase	Interproscan
IPR002489	Domain	Glutamate synthase, alpha subunit, C-terminal	Interproscan
IPR006982	Domain	Glutamate synthase, central-N	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43100	GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006537	Biological Process	glutamate biosynthetic process	Interproscan
GO:0015930	Molecular Function	glutamate synthase activity	Interproscan
GO:0016638	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0006807	Biological Process	obsolete nitrogen compound metabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00265	gltB; glutamate synthase (NADPH) large chain	EC:1.4.1.13	Peptidases and inhibitors	ko01002	deepkoala