Genomic Location: HOLI00522:354965...355570
NR annotation: WP_031568360.1, polyribonucleotide nucleotidyltransferase [Pararheinheimera texasensis]
| CDS | ||||
| HOLI00522.g17045.t1 | ||||
| Transcript |
| HOLI00522.g17045.t1 |
| Protein |
| HOLI00522.G17045 |
| Uniprot term | Description |
|---|---|
| Q8EHL1 | Polyribonucleotide nucleotidyltransferase OS=Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1) OX=211586 GN=pnp PE=3 SV=2 |
| Q12QG9 | Polyribonucleotide nucleotidyltransferase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=pnp PE=3 SV=2 |
| Q0HLF6 | Polyribonucleotide nucleotidyltransferase OS=Shewanella sp. (strain MR-4) OX=60480 GN=pnp PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00013 | KH_1 | KH domain | Domain | Interproscan |
| PF00575 | S1 | S1 RNA binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004087 | Domain | K Homology domain | Interproscan |
| IPR012340 | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR027408 | Homologous_superfamily | PNPase/RNase PH domain superfamily | Interproscan |
| IPR036612 | Homologous_superfamily | K Homology domain, type 1 superfamily | Interproscan |
| IPR012162 | Family | Polyribonucleotide nucleotidyltransferase | Interproscan |
| IPR003029 | Domain | S1 domain | Interproscan |
| IPR004088 | Domain | K Homology domain, type 1 | Interproscan |
| IPR036345 | Homologous_superfamily | Exoribonuclease, PH domain 2 superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11252 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0000175 | Molecular Function | 3'-5'-RNA exonuclease activity | Interproscan |
| GO:0004654 | Molecular Function | polyribonucleotide nucleotidyltransferase activity | Interproscan |
| GO:0005829 | Cellular Component | cytosol | Interproscan |
| GO:0006401 | Biological Process | RNA catabolic process | Interproscan |
| GO:0006402 | Biological Process | mRNA catabolic process | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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