Gene detail

Detailed information of HOLI00522.G17048 in Hydra oligactis

Genomic Location: HOLI00522:357737...358663
NR annotation: WP_031568362.1, tRNA pseudouridine(55) synthase TruB [Pararheinheimera texasensis]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
A4SJR7	tRNA pseudouridine synthase B OS=Aeromonas salmonicida (strain A449) OX=382245 GN=truB PE=3 SV=1
Q0HLF9	tRNA pseudouridine synthase B OS=Shewanella sp. (strain MR-4) OX=60480 GN=truB PE=3 SV=1
Q0HXR3	tRNA pseudouridine synthase B OS=Shewanella sp. (strain MR-7) OX=60481 GN=truB PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16198	TruB_C_2	tRNA pseudouridylate synthase B C-terminal domain	Family	Interproscan
PF01509	TruB_N	TruB family pseudouridylate synthase (N terminal domain)	Family	Interproscan
PF09157	TruB-C_2	Pseudouridine synthase II TruB, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014780	Family	tRNA pseudouridine synthase II, TruB	Interproscan
IPR032819	Domain	tRNA pseudouridylate synthase B, C-terminal	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR002501	Domain	Pseudouridine synthase II, N-terminal	Interproscan
IPR036974	Homologous_superfamily	PUA domain superfamily	Interproscan
IPR015240	Domain	tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13767	TRNA-PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006400	Biological Process	tRNA modification	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan
GO:1990481	Biological Process	mRNA pseudouridine synthesis	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03177	truB, PUS4, TRUB1; tRNA pseudouridine55 synthase	EC:5.4.99.25	Transfer RNA biogenesis	ko03016	deepkoala