Detailed information of HOLI00580.G30090 in Hydra oligactis

Genomic Location: HOLI00580:311358...313631
NR annotation: WP_108615391.1, tetratricopeptide repeat protein [Acidovorax sp. HMWF029]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9HU21dTDP-4-dehydrorhamnose 3,5-epimerase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rmlC PE=1 SV=1
Q9M8Y0Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana OX=3702 GN=SEC PE=1 SV=1
P37780dTDP-4-dehydrorhamnose 3,5-epimerase OS=Shigella flexneri OX=623 GN=rfbC PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13432TPR_16Tetratricopeptide repeatRepeatInterproscan
PF00908dTDP_sugar_isomdTDP-4-dehydrorhamnose 3,5-epimeraseDomainInterproscan
PF13844Glyco_transf_41Glycosyl transferase family 41FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR000888FamilydTDP-4-dehydrorhamnose 3,5-epimerase-likeInterproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR011051Homologous_superfamilyRmlC-like cupin domain superfamilyInterproscan
IPR014710Homologous_superfamilyRmlC-like jelly roll foldInterproscan
IPR029489DomainO-GlcNAc transferase, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44998-Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0008830Molecular FunctiondTDP-4-dehydrorhamnose 3,5-epimerase activityInterproscan

TOP