Gene detail

Detailed information of HOLI00580.G30148 in Hydra oligactis

Genomic Location: HOLI00580:371515...373497
NR annotation: WP_056745867.1, 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein [Acidovorax sp. Root568]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00580.g30148.t1

ATGCAAACCATCCGCTACGAACTCATCCCCGCCCAAGGCACCGAAGGCCAGGTCGCCGTCATCACGTTTGACGAAACCAACTCCCCCGTCAACACCATGTGCCGCCAGTGGCAGCAAGAGCTAGGCGAGGTCACGGCCCAGGTGCTGGGCGACCGCGAACGCCTGGGCACGGCCCTCAAGGGCATCGTGCTCGCATCCGCCAAGACCAGCTTCTTGCTTGGCGCCGACCTCAAGGCCACCATGCGCCTGACACCCGCCGACGCGCCCGCCGTGTTCGGCGAGATCGAGCGCATGAAGAAACACTTTCGCACGCTCGAAACCCTGGGTATCCCCGTCGTGGCCTGCCTCAACGGCGCGGCGCTGGGCGGCGGCTGGGAGGTGGCCCTGATCGCCCACTACCGCATCGCCGTGGCCGACCCCAGGATCCAGTTCGGCCTGCCCGAGGTGACGCTGGGCCTGATGCCCGGCGCCACCGGCGTGACCAAGATGACGCGCCTGCTGGGCCTGATGGGCGCGCAGCCCTACATCCTGGAAGGCAAGCTCTTCAACCCCGCCGAGGCGCTGGAGCTGCAACTGGTGCACGAGCTGGTGGCCACGCGCGAGCAACTGCTCCCCGCCGCCCTGGCCCACATCGCCACCCACCCGCACGCCGTGCAGCCGTGGGACGACAAGAACTACAAAATGCCCGGCGGCACACCCGCCAACCCCAAGATCGCTGGCGCCCTCACCGTGGCGCCCGCCATGCTCAAGAAGACCACCCGCGGCCGCTACCCCGCGCCCGAGGCCGCGCTGGCCGCCATGGTCGAAGGCGCCATGGTGGACTACGACACCGCCCTGCGCATCGAAAGCCGCTACCTCGCCCGCCTGATGACCGGCCCCGTGGCGCGCAACACGATCAACACATTCTTCTTCGACATGAACGCGATCAAGAGTGGCAAGTCACGCCCCGGCACCACGCCACGCTACAAGCCACAAAAGGTTGGCATCCTGGGCGCCGGCATGATGGGCGCGGGCATCGCCTGGGCCCAGGCCAGCCGGGGCATCGCCACCGTGCTCAAGGACGTGAGCACCGAGAAGGCCGAGGCGGGCAAGGCCTACAGCGCCAAGCTCACGCAGGCCCGCGTGGACAAGGGCCGCATGACGGCCGAGGCGCAGCAGGCGCTGCTCGCGCGCATCACACCCACCGCCAGCGCGGCCGACCTGGCAGGCTGCGACCTCATCATCGAAGCCGTGTTCGAAAGCCGCGACCTCAAGGCCCAGGTCACGCGTGAGGCCGAGTCGCAACTCTCGCCCGGCGGGTTCTTTGCCAGCAACACCTCCACCCTGCCCATCAGCGGCCTGGCCACCGCCAGCAGCAAGCCCGAGAAGTTTGTCGGCATCCATTTCTTCAGCCCCGTGGACAAGATGAAGCTGGTGGAGATCATCCGCGGCAAACAGACGGACGACGAAACCGTGGCCCGCGCCTTCGACTACGTGCAGGCCCTGGGCAAGGTACCCATCGTGGTCAACGACTCACGCGGCTTCTACACCAGCCGCACCTTCGGCACCTTTGTGATGGAAGGCGCCGCCATGCTGGGCGAAGGCATCCCCGCCGCCGCCATTGAAAACGCCGCCATGCAGGCTCGGCCTGCCCGTAGGCCCCCTGGCCGTGCTGGACGAAACCGCGCTGACCTTGAGCGTGCATGTGCTGGAGCAGACCCGCGCCGACTACGCCGCCGAGGGCAAGACCTACACCGCCACCCCCGGCGAGCTGCTGGTGGAGCGCATGGTCAAAGAGCTAAAGCGCCCCGGCCGCGCCGGTGGCGGCGGCTTTTACGACTACCCCGCAGGCGCCAAGAAGCACCTGTGGCCGGAGCTGAAGGGCCTGTTCGAAAAGCCCGGCGTGGAATGGAGCGTGCAGGAGATCCAGGACCGCCTTCTCTACCGCCAGGCCATCGAGACCGCGCGCTGCCTCGCCGAGGGCGTGTTGACCAGCGTGCATGA

Transcript

HOLI00580.g30148.t1

Protein

Uniprot

Uniprot term	Description
Q6DAP5	Fatty acid oxidation complex subunit alpha OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=fadB PE=3 SV=1
A8GYG0	Fatty acid oxidation complex subunit alpha OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) OX=398579 GN=fadB PE=3 SV=1
A6WQ25	Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS185) OX=402882 GN=fadJ PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00378	ECH_1	Enoyl-CoA hydratase/isomerase	Domain	Interproscan
PF02737	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001753	Family	Enoyl-CoA hydratase/isomerase	Interproscan
IPR018376	Conserved_site	Enoyl-CoA hydratase/isomerase, conserved site	Interproscan
IPR029045	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR050136	Family	Fatty acid oxidation complex subunit alpha	Interproscan
IPR006176	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43612	TRIFUNCTIONAL ENZYME SUBUNIT ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0070403	Molecular Function	NAD+ binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01782	fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase	EC:1.1.1.35 EC:4.2.1.17 EC:5.1.2.3	Caprolactam degradation	ko00930	deepkoala