Gene detail

Detailed information of HOLI00655.G56706 in Hydra oligactis

Genomic Location: HOLI00655:44329...46652
NR annotation: WP_105259610.1, cation-translocating P-type ATPase [Rhodoferax sp. TS-BS-61-7]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00655.g56706.t1

ATGATTGCTGCAACGCTGGCTTCCACTGCGCCCATGCCCCACCCGGTGGCGGCATTGGCCTTGCTGGACGACCCGCAGGAGTGGAGCAGCTTCAGCCATGCGGACCGCCACGACCCCGCCCAGTGGGAGTCCAGCGTGGTGATTGAAGGCATGCACTGCGCCGCCTGCTCCCTGACGGTAGAAGACGCCTTGCGCCAGGTGCCGGGTGTCCTCAGCGCCCAGGTCAGCGCCGCCAGCCAGCGTGCCCGTGTGGTCTGGTCATCGGCGGTGGTGCAGCCCTCGCGCTGGATGCAAGCGGTGCAACAGGCCGGTTACCGCGCGGTGCCCGCCAACGATGTGTTTGCCAGCGAGCGCCGCCGCAAAGCCGCACGCCAGGCGCTGTGGCGCTGGCTGGTGGCGGGCCTGTGCATGATGCAGGTGATGATGTACGCATGGCCGGCCTACGTGGCCCAGCCCGGCGATTTGACTGGCGAGATGGAGCAACTGCTGCGCTGGGCGTCCTGGGTGCTCACGCTGCCGGTGATCCTGTTTTCTTGCGGCCCGTTTTTCAAAAGTGCGCTGCGTGATGTGGCGCAACTGCGCATCAGCATGGACTTGCCGGTGGCCCTGGGCATGGTGATCACCTTTGCGGTCAGCACCGCGGGCACCTTTGACCCGCAGGGCATTTTTGGGCGCGAGGTGTTTTTCGACTCGCTCACCATGTTTGTCTTCTTCCTGCTCACCGGTCGCTGGCTGGAGCTGCGCCTGCGCGATCGCACCGCCGGTGCACTGGAGGCGCTGATGAACCGCCTGCCCGACAGCGTGGAGCGCCGTACGGCACAAGGCAACTTTGAGCGCGTGGCGGTACGCCGCTTGCAGGCGGGCGACCTGGTGCGCGTGCAGCCTGGCGAAGCCTTTGCTGCCGATGGAGTGGTGGAGCAGGGCAGCACCCTGGTGGACGAGGCGCTGCTCAGCGGTGAATCGCACCCGCTCCCACGCGCGGTGGGCGCTGCCGTGGTGGCAGGTAGCCACAACCTGCTTGCCACCGTGCTGGTGCGGCTCACCCAGGTGGGGGCCGCCACGCGTTTTGCCCAGATCGTGGCGCTGATGGAGAGTGCCTCCACCACCAAACCACGTAGCGCCTTGCTGGCCGACCGCCTGGCCAAACCTTTTTTGCTGGCCGTGCTGGCGAGTGCGGCGCTGGCCTGTGCCTGGTGGTGGCCGCAGAACCCGGGCCATGCACTCATGGTGGCCGTGGCCGTGCTGGTGGTGACTTGCCCCTGCGCCCTGTCACTGGCCACACCGGCGGCCATGCTGGCGGCTGCGGGCAGCCTGGCACGCGCGGGCCTCTTGGTGCGCAACCTGCCCAGCCTGGAGGCGCTGGCCGCGGTAGACACGGTGGTGTTTGACAAGACCGGTACGCTGACACGTGACGCCATGGCCCTGCAGGCGGTGCAGGCCCGCGCGGGTGTGTCGCGCAGCGATGCCCTGGCCATGGCTGCCGCGCTGGCCCAGCATTCTTTGCACCCGGCTTCCAAAGCCTTGGTGCGTGCGGCCAGCCAAGAAGAGGGGCTGGTGGCCTGGGCCTGCACCGCAGTGCAAGAGTCCGCCGGGCAGGGCGTGGCGGGGCAGCTGGCCGCCAACGACGAGTTACCAGACGGGTTGTGTGTGCACCTGGCCGACGCCCAGGGCTGGCTGGCCACCTTTGTGTTGCAGGAAGACATGCGGCCCGAAGTGCCTGCTGTGGTGGCGGCCCTGCAGGCGCAGGGGGTGCAGGTGCACCTGCTCTCTGGCGACCGGCCCGAAGCTGTGCTGCAGGTGGCTGCCCAGGCCGGCATTTCGCAGGCGCTGGGCGGCTGCTCGCCAACCGACAAGCTGGCCTATTTGCAGCGCCTGCAAGCCCAGGGCCACACCGTGGCCATGGTGGGTGACGGGCTCAACGACGGCCCAGTGCTGGCCGGGGCCCATGTGTCGTTTGCGTTTGGCCAAGCCGTGCCGCTGGCCCAGGCGCAGTCGGACCTGGTGGTGCTGGGCGGCAGCCTGGATGCGGTGGTGCTGGCGGTGCAACTGGCGCGCAAGACCCAGCGCATCGTGCGGCAAAACCTGTGGTGGGCATTGGCCTACAACGCGGCCTGTGTGCCGCTGGCGGTGGCGGGCTACCTGCCAGCGTGGCTGGCGGGTTTGGGCATGGCTTGCAGCTCCTTGCTGGTGGTCCTCAACGCCTTGCGCCTGGCCCGTACACCGCGCACTGCGCCACTGCAACCTTCGGAGGTCTGA

Transcript

HOLI00655.g56706.t1

Protein

Uniprot

Uniprot term	Description
Q59207	Nitrogen fixation protein FixI OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=fixI PE=3 SV=1
P37279	Probable copper-transporting ATPase PacS OS=Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805) OX=1140 GN=pacS PE=3 SV=2
P9WPU0	Copper-exporting P-type ATPase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=ctpA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00403	HMA	Heavy-metal-associated domain	Domain	Interproscan
PF00122	E1-E2_ATPase	E1-E2 ATPase	Family	Interproscan
PF00702	Hydrolase	haloacid dehalogenase-like hydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006121	Domain	Heavy metal-associated domain, HMA	Interproscan
IPR036163	Homologous_superfamily	Heavy metal-associated domain superfamily	Interproscan
IPR023299	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR018303	PTM	P-type ATPase, phosphorylation site	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR023298	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR001757	Family	P-type ATPase	Interproscan
IPR008250	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43520	ATP7, ISOFORM B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0005507	Molecular Function	copper ion binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0043682	Molecular Function	P-type divalent copper transporter activity	Interproscan
GO:0055070	Biological Process	copper ion homeostasis	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0005215	Molecular Function	transporter activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01533	copB; P-type Cu2+ transporter	EC:7.2.2.9	Enzymes with EC numbers	-	deepkoala