Gene detail

Detailed information of HOLI00655.G56840 in Hydra oligactis

Genomic Location: HOLI00655:202738...203886
NR annotation: WP_236635458.1, RluA family pseudouridine synthase [Rhodoferax sp. TS-BS-61-7]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q8XYX8	Ribosomal large subunit pseudouridine synthase D OS=Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000) OX=267608 GN=rluD PE=3 SV=1
Q9JVB6	Ribosomal large subunit pseudouridine synthase D OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=rluD PE=3 SV=1
Q9K0B0	Ribosomal large subunit pseudouridine synthase D OS=Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58) OX=122586 GN=rluD PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01479	S4	S4 domain	Domain	Interproscan
PF00849	PseudoU_synth_2	RNA pseudouridylate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006225	Family	Pseudouridine synthase, RluC/RluD	Interproscan
IPR002942	Domain	RNA-binding S4 domain	Interproscan
IPR006224	Conserved_site	Pseudouridine synthase, RluA-like, conserved site	Interproscan
IPR050188	Family	RluA Pseudouridine Synthase	Interproscan
IPR006145	Domain	Pseudouridine synthase, RsuA/RluA-like	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR036986	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21600	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06180	rluD; 23S rRNA pseudouridine1911/1915/1917 synthase	EC:5.4.99.23	Ribosome biogenesis	ko03009	deepkoala