Gene detail

Detailed information of HOLI00655.G56874 in Hydra oligactis

Genomic Location: HOLI00655:233702...235861
NR annotation: WP_105263078.1, 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein [Rhodoferax sp. TS-BS-61-7]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00655.g56874.t1

ATGAAAACCATCCAATACTCCTTGGCCCACGGCATCGCCACCATCACCTTCGATGAGCCCGACTCCCCCGTCAACACCATGTGCCTGCAATGGCAGGAAGACATGGACGCCGTGGCCGCGCGCGTGCTGCAGGACAAGGACAGCATCACCGGCATCCTGCTGGCGTCGGCCAAGACCACCTTCTTTGCAGGCGCCGATCTCAAGGCCGCCATGCGGCTGACCCCGGCGGATGCGCCGCGCATCTTTGAAGAGATCGAGCGGGTGAAGAAGAACTTCCGCACCATCGAGACCTTGGGCAAGCCCGTGGTCAGCCTGCTCAACGGCACGGCGCTGGGCGGCGGCTGGGAGGTGGCGCTGGTGGGCCACTACCGCATTGCCGTGGACGACAAGAAAACCCAGTTTGGCTTGCCCGAGGTGACGCTGGGCCTGCTGCCCGGCGCCAGCGGCGTGACCAAGATGACGCGTCATTTGGGCCTGATGGGCGCGCAGCCTTACCTGGTGGAGGGCAAAACTTTCAGCCCGGCCGAGGCCAAGGGCCTGGGTCTGGTGCACGACCTGGTGGCGCCCGGCCCCGATGCCGCGGCCGAGATGAAAACCAAGGCCCTGGCCTGGATTGCCGCCAACCCCAACGCCCAGCACCCCTGGGAGGCCAAGGGCTACAAGGTACCCGGCGGCCTGCCCTCCTCGCCCGCCGTGGCTGGCATGCTGCCCGTGGTGCCCGCGGTCATCAAGAAGAACACCCGCGGCCTCTACCCCGCGCCTGAGGCCATCATCGCCTGCATGGTCGAAGGCCTGCAGGTGGACCTGGAGACCGCGCTACGCATTGAGAGTCGCTACCTGGCCAAGCTCATGTCCGGCACTCAAGCCAAGGCCATGATCAACACCTTTTTCTTCAACCTCAACGCCATCAAGAGCGGCCAGAGCCGCCCGGCTGGCGTGCCACGCTTCAAGCCCGCCAAGGTGGGCCTGCTGGGCGCCGGCATGATGGGCGCGGGTATCGCCTACAGCCAGGCCAGCAAGGGCATAAGCACGGTGCTGAAGGACGTGAGCCAGGAGAAGGCTGACCTAGGCAAGAGCTACAGCGCCAAGATCACGCAAGGCCGTGTGGACAAGGGCCGCATGAAGCCCGAGGCGCAGCAAGCCATCCTCGACCTGATCCACCCCACCGGCAGCGCGGCCGACCTGCAGGGCTGCGACCTGATCATCGAAGCGGTGTTCGAGAACCGCGAGCTCAAGGCCCGTGTGACGCAAGAGGCCGAGCCGCTGCTCGCACCCGGCGGCTTCTTTGCCTCCAACACCTCCACCCTGCCGATTACCGGGCTGGCCACGGCGAGTGCCAAACCCGAGAAGTTCATCGGCATCCACTTCTTCAGCCCCGTGGACAAGATGAAGCTGGTGGAAATCATCAAGGGCAAGCAGACCGATGATGAGACCGTGGCCCGCGCCTACGACTACGTGCAGGCGCTGGGCAAGTTCCCTATCGTGGTGAACGATTCGCGCGGCTTTTTCACCAGCCGCGTGTTTGGCACCTTTGTGATGGAGGGCGCGGCCATGCTGGGCGAAGGCATTCCCGCTGCGGCGATTGAGAACGCCGGTGTGCAGTGCGGCATGCCCGTGGGGCCACTTGCGGTGCTGGACGAAACCGCGCTCACGCTGAGCCTGCATGTGATGGAACAGACCCGCAAAGACTTTGAGGCCGAAGGCAAGACCTACACCGCCACACCGGGCGAGCTGGTGGTGGAGCAGATGGTGCGTAAGCATGAACGCCCCGGCCGTGCCGGTGGTGCGGGCTTCTACGAATACCCCACCGAGAAAGGCGCCAAGAAGTTCCTGTGGCCCCAGCTCAAACCGCTGTTCGAGAAGGCGGATGCCAAGTGGACCATCACCGACCTGAAAGACCGCCTGCTCTACCGCCAAGCCGTGGAGACCGCGCGCTGCCTGGCCGAGGGCGTGCTGACCAGCGTGCACGACGCCAACATTGGCTCCATCTTCGGCATCGGTTTTCCAGCCTGGACCGGCGGCGCCATGCAATTCATCTACGGCATGGGCATCGAAGGTTTTGAGCAACATGCGGCGGAATTGGCGGCCCAGTTTGGCCCGGGCTTTGCTTTGGGCGATGATGTGAAGGCAGTCATCCGCCGCTACCAACCCCAGTACTAA

Transcript

HOLI00655.g56874.t1

Protein

Uniprot

Uniprot term	Description
Q07ZP8	Fatty acid oxidation complex subunit alpha OS=Shewanella frigidimarina (strain NCIMB 400) OX=318167 GN=fadJ PE=3 SV=1
A6WQ25	Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS185) OX=402882 GN=fadJ PE=3 SV=1
B8CH91	Fatty acid oxidation complex subunit alpha OS=Shewanella piezotolerans (strain WP3 / JCM 13877) OX=225849 GN=fadB PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00725	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02737	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan
PF00378	ECH_1	Enoyl-CoA hydratase/isomerase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR008927	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR006108	Domain	3-hydroxyacyl-CoA dehydrogenase, C-terminal	Interproscan
IPR029045	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR050136	Family	Fatty acid oxidation complex subunit alpha	Interproscan
IPR006176	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan
IPR001753	Family	Enoyl-CoA hydratase/isomerase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43612	TRIFUNCTIONAL ENZYME SUBUNIT ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0070403	Molecular Function	NAD+ binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01782	fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase	EC:1.1.1.35 EC:4.2.1.17 EC:5.1.2.3	Caprolactam degradation	ko00930	deepkoala