Gene detail

Detailed information of HOLI00823.G35804 in Hydra oligactis

Genomic Location: HOLI00823:76213...79180
NR annotation: WP_218341160.1, MULTISPECIES: type I secretion system permease/ATPase [unclassified Acidovorax]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00823.g35804.t1

ATGCGCAATTTGGAGGGAGAGCCCCGCGAATCAAGCGTCAGTGCGTCTGTCCGTTGCGGAGATGATCCAGAACAACAGCAACAAACAATGGTTGCAACGATGCCTCAACGAGGTAGCTGCCATGAGCAGCTGGTCGGTTTATGCATCATTGCTCGGTTGCATCAAGTGGCCGCCGATCCCGCAACTTTGGCGCATCAGTTGAGCCTTCAGTCGACCAGTGCACTTGTTGTTTCCGATATTCTTCGTGCCGCCAAATTTCTATCGCTCAAAGCTAAGCTCTCGCGATGCACGCGTGATCGACTCACATTAGCGCCGTTACCAGCGCTTGCAGTGATGCACTCCGAAACCGGAGCTTTGCGAACTGTCGTGCTTGCACAGTGCGACGGCCAGCGCGTGCTAGTTCAGGACCCTTCCGCTTCTGGTGCCAGCTCCCGCCCCATCATCGAATCCCTGGAGGCTTTCGCTGCCCAATGGACCGGCGAACTCATCCTGATCACCAGCCGCGCCAGCCTGGCGGGCGAGCTCGCCAAGTTCGACTTCTCCTGGTTCATCCCCAGCCTCATCAAACACCGCAAGCTGCTGGGCGAGGTGCTGCTCATCTCCTTCATGCTGCAGCTCTTCGCCCTGGTCAGCCCGCTGTTCTTCCAGGTCGTGATGGACAAAGTGCTCGTGCACCGGGGGATCACCACACTCGACGTGCTCGTCATCGGTCTGGTGGTGGTTGTGGTGTTCGAGAGCCTGCTCAACGCCCTGCGCACCTACGTCTTCAGCCACACCACCAGCCGCATCGACGTGGAACTCGGCGCCCGGCTGTTCCGCCACCTGGTGCAACTGCCCCTGGCCTACTTCCAGGCCCGCCGCGTAGGCGACTTCGGTGGCCCGCGTGCGCGAGCTGGAGAACATCCGCAGCTTTCTCACCGGCAACGCCCTCACTGTCGTGCTCGACGTGCTGTTCTCGGTGATCTTCATCGCCGTCATGCTGTTCTACAGCGTGCCGCTGACCTTCATCGTGCTGGTCAGCCTGCCGCTGTACTTTGGCCTGAGCCTTGCGGTGGTGCCCATCCTGCGCAAACGCCTGGACGTCAAATTCGCCCGGGGTGCAGAAAACCAATCCATGCTGGTCGAGACCGTCACCGGCATCCAGACTGTCAAGGCCAGCGCACTGGAGCCCAGCTTCGCGCGCCGCTGGGACAACCAGCTCGCCGCCTACGTCAGCGCCAGCTTCAAGACCCAGAACCTCGCCAGCTGGGCCCACGAAGGCGTCAACCTCATTGGCAAACTCGTCAATGCCGCCACCCTCTGGTACGGCGCCCACCTGGTCATGGGGGTGAACTCACCGTGGGCCAGTTTGTCGCCTTCAACATGTTTGCCCAGCGTGTGGCCCAGCCCATCATGCGCATGGCCCAGCTGTGGACCGACTTCCAGCAGACCGGCATCTCCATGGCCCGCCTGGGCGACATCCTGAACACCCGCACCGAAGTCCCCCCAGCAGCGCCGCCCAACTGCCCCCCATCAAAGGCCGCATCACCCTTGGACGGCATCCACTTCCGCTATCGCCCCGGAAGCCGCCCCCGTGCTCGGCGGCGTGAGCCTGGACGTGCGCCCCGGCGAAGTCATCGGCATCGCCGCATCCTGGTGGACGGCATCGACATCAGCCTCGTCGACGCCGCCCAGCTGCGCCGCCAGGTGGGCGTGGTGCTGCAAGAGAACCTGCTCTTTAACCGCAGCGTGCGCGAGAACATCGCCATTGCCGACCCCGCCGCCCCCATCGAAGCCGTGGTCCACGCCGCCCAACTGGCTGGTGCCCACGACTTCATCAGCGAACTGCCCGAAGGCTACGACACCCTGGTGGGCGAACAAGGCGGCAGCCTCTCGGGCGGGCAGCGCCAGCGCATCGCCATCGCCCGGGCCCTGTTCACCAACCCCCGCATCCTCATCCTGGACGAAGCCACCAGCGCCCTCGACTACGAGTCGGAGGCCATCATCCAGCGCAACATGCAGCACATCTGCCAGGGCCGCACCGTGCTCATCATTGCCCACCGCCTGAGCGCGGTAAGACACGCCCACCGCATCATCGTCATGGACAAAGGCCGCATCGTGGAAGCCAGCCCGCACGACGCCCTGATCCAGAAACAGCAAGGCCTGTACGCCCACCTGTGGCGCATGCAGGATGGCAGCGGCCGGGCCACAGCGCCATCCACACCCGGCGGCGGCAACCACCCCACACAAGAGCCACCCCGCCATCCGGCCAGCGAACTGCTGGCCCGCTACCGCGCCATCTTCCAAGCCGCCTGGCAGCACCGCCACGAACTGGCTGGCCCCGCCCGCCTAGCCGACGAACAAGCCTTCCTGCCCGCAGCCCTGAGCCTGCAGGAAACCCCCGTGCACCCCGCCCCCCGGCGCATCGCCTATGTGCTCATGGCCCTGTTCCTCATCGCCCTGGCCTGGGCCATCCTGGGCAAAATCGACATCGTGGCCGTGGCCCCCGGCCGCATCATCGTGAGCGACCGCACCAAAGTCATCCAGCCCCTGGAGCGCAGCGTGGCCCAGCGCATCCTCGTCAAAGACGGCGACCACGTAGAAGCAGGCCAGCCCCTGGTAGAGCTGGACCCCACCACCGCCCAGGCAGACAAAGCCAGCCTGGTGGAGACCCACAAGGCCGCCCAGTCCGAAATGGCTGCGCGCGCAGATTCTGCAGAAAATGCTATCAAAACAAGAGCTATCAGCGCCCATCCATCAGGCGGTGGATGCCAAAAAAGCCATCAATCAAGAGCTTCACCAGGGCACCCCAGCAGACTGGACCCCCGCCGACAAGGCCGACACCCAGGCCCAACTGGCCGCTGA

Transcript

HOLI00823.g35804.t1

Protein

Uniprot

Uniprot term	Description
Q93FH0	Leukotoxin translocation ATP-binding protein LktB OS=Mannheimia haemolytica OX=75985 GN=lktB PE=3 SV=2
Q93FH2	Leukotoxin translocation ATP-binding protein LktB OS=Mannheimia haemolytica OX=75985 GN=lktB PE=3 SV=1
P0C087	Leukotoxin translocation ATP-binding protein LktB OS=Mannheimia haemolytica OX=75985 GN=lktB PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF03412	Peptidase_C39	Peptidase C39 family	Family	Interproscan
PF00664	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR036640	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR039421	Family	Type 1 protein exporter	Interproscan
IPR005074	Domain	Peptidase C39, bacteriocin processing	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011527	Domain	ABC transporter type 1, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24221	ATP-BINDING CASSETTE SUB-FAMILY B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0034040	Molecular Function	ATPase-coupled lipid transmembrane transporter activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008233	Molecular Function	peptidase activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan