Detailed information of HOLI00823.G36000 in Hydra oligactis

Genomic Location: HOLI00823:278024...279916
NR annotation: KAF4516525.1, hypothetical protein B566_EDAN003272 [Ephemera danica]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A1TVT3Large ribosomal subunit protein uL1 OS=Paracidovorax citrulli (strain AAC00-1) OX=397945 GN=rplA PE=3 SV=1
B9MH50Large ribosomal subunit protein uL1 OS=Acidovorax ebreus (strain TPSY) OX=535289 GN=rplA PE=3 SV=1
A1WCN2Large ribosomal subunit protein uL1 OS=Acidovorax sp. (strain JS42) OX=232721 GN=rplA PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00687Ribosomal_L1Ribosomal protein L1p/L10e familyDomainInterproscan
PF03946Ribosomal_L11_NRibosomal protein L11, N-terminal domainDomainInterproscan
PF00298Ribosomal_L11Ribosomal protein L11, RNA binding domainDomainInterproscan
PF00466Ribosomal_L10Ribosomal protein L10FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036796Homologous_superfamilyLarge ribosomal subunit protein uL11, N-terminal domain superfamilyInterproscan
IPR036769Homologous_superfamilyLarge ribosomal subunit protein uL11, C-terminal domain superfamilyInterproscan
IPR028364FamilyRibosomal protein uL1/ribosomal biogenesis proteinInterproscan
IPR005878FamilyLarge ribosomal subunit protein uL1, bacterial-typeInterproscan
IPR022973FamilyLarge ribosomal subunit protein uL10, bacterialInterproscan
IPR043141Homologous_superfamilyLarge ribosomal subunit protein uL10-like domain superfamilyInterproscan
IPR020784DomainLarge ribosomal subunit protein uL11, N-terminalInterproscan
IPR020785Conserved_siteLarge ribosomal subunit protein uL11, conserved siteInterproscan
IPR000911FamilyRibosomal protein uL11Interproscan
IPR020783DomainLarge ribosomal subunit protein uL11, C-terminalInterproscan
IPR047865FamilyLarge ribosomal subunit protein uL10, bacterial typeInterproscan
IPR023673Conserved_siteLarge ribosomal subunit protein uL1, conserved siteInterproscan
IPR016095Homologous_superfamilyLarge ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainInterproscan
IPR001790FamilyLarge ribosomal subunit protein uL10Interproscan
IPR002363Conserved_siteLarge ribosomal subunit protein uL10, conserved site, bacteriaInterproscan
IPR023674Homologous_superfamilyRibosomal protein uL1-likeInterproscan
IPR006519FamilyLarge ribosomal subunit protein uL11, bacterial-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR3642754S RIBOSOMAL PROTEIN L1, MITOCHONDRIALInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0015934Cellular Componentlarge ribosomal subunitInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0022625Cellular Componentcytosolic large ribosomal subunitInterproscan

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