Gene detail

Detailed information of HOLI00831.G29606 in Hydra oligactis

Genomic Location: HOLI00831:147726...214860
NR annotation: XP_047131930.1, uncharacterized protein LOC100201799 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00831.g29606.t1

ATGGCGCTTAATCTAGAATGCAGTCATTTACTAACTGGTTTTAAGGAAGCATTAGAAAACTGGTTGAGAAAGCAATCGATAAAAAATATTTACTTCAAAAGAGGGTTTCGTAGGATGAGGTATTTGATACTTATTGTATCCATATTTTCATTACCAAGAGCAACTAATGGATTAGTTAACAATGCACACAATAGTTCAATGCAAGATATTATAATTGAAAATGGTAACGATGAAAGTGGGCCTTGTTTGTTAGCAGTTAACCAAGTTGACAGAACGGTTCTGAGAGTTGGTAATTTTATACCACAATGTGATGAATATGGGAATTATAAGCTGTTGCAGCGTCACGCATCCACTGGGTATGCTTGGTGTGTTGATGTGAAAACTGGTGTTGAAATAGAAGGAACACGTGTTAAACCAGGTGAAAAGGATCCGATTTGTGGAGAATTTGATGGTGGTTTATCCGAGTGGAGCTCATTTTCTGAATGTTCAGCTACTTGTGGGGATAGTACAAAAACAAGAACACGAACATGTACCAATCCTACTCCTACTAAAAATGGAAAAAATTGTGTTGGCGAGTTGACTGAAACAGTTGATTGTGATGTAGCAAGTTGTCAAGAGGTTGATGAATTGGTTATTGATGAAGAGTCTGATTTGAAACGAGTGTACATTGCTGATCCATGGTATGATGCACAGGATGGTTCTGTTAGGAAAATCAGAATACAAAACGGCAAAGAGGAATTTGATGGTGGTTTATCCGAGTGGAGCTCATTTTCTGAATGTTCAGCTACTTGTGGGGATAGTACAAAAACAAGAACACGAACATGTACCAATCCTACTCCTACTAAAAATGGAAAAAATTGTGTTGGCGAGTTGACTGAAACAGTTGATTGTGATGTAGCAAGTTGTCAAGAGGTTGATGAATTGGTTATTGATGAAGAGTCTGATTTGAAACGAGAGGTTGATGAATTGGTTATTGATGAAGAGTCTGATTTGAAACGAGAGGTTGATGAATTGGTTATTGATGAAGAGTCTGATTTGAAACGAGGAAAATCAGAATACAAAACGGCAAAGAGGAATTTGATGGTGGTTTATCCGAGTGGGGCTCGCTTTTCTGAATGTTCAGCTACTTGTGGGGATAGTACAAGAACAAGAACACGAACATGTACCAATCCTACTCCTACTCAAAATGGCAAAAACTGTGTTGGCAAGTTGACTGAGACTGATGTTTGTAATGTAGCAAGGTGTCAAGAGGTTGATGAATTGGTTATTGATGAAGAATCTGATTTGAAACGAGTGTACATTGCTGATCCATGGTATGATGCACAGGATGGTTCCATTAGGAAAATCAGAATACAAAACGGCAAAGAGGAATTTGATGGTGGTTTATCCGAGTGGGGCTCGTTTTCTGAATGTTCAGCTACTTGTGGGGATAGTACAAGAACAAGAACACGAACATGTACCAATCCTACTCCTACTCAAAATGGCAAAAACTGTGTTGGCAAGTTGACTGAGACTGATGTTTGTAATGTAGCAAGGTGTCAAGAGGTTGATGAATTGGTTATTGATGAAGAATCTGATTTGAAACGAGCTGATCCATGGTATGAACCACAGGATGGGTCCATTAAGGAAATCATAATTCAAAATGGCAAAGAGGAAAGTCCTAAAGGAAAGTGTGCCGATGGTTTGTTAGAATATAAAAATCATTGCTACTTTTTCCACAAAGTTACTCCAATAATACCTGGGAGAACTTGGAAAGAATCACATGATTCATGTAAGAAGATGGGAGGGCATTTATTAAGTCTTACTGAGCAGTCAGAAGTTGCGTTTGTTATGAACCAGCTCAAGGATGAAGGCGTTAAAACTAAGAAGCACTGGATAGGTCTCAATGCAATCCAGAATAATAGAACATTTGTGTGGTCTGATAAATCACCATTGCTGTTCTTAAATTGGAAAACCCAGGAACCTAATAATTTTAACAACTTAAACGAAGACTGTGTGGAAATGACCAATGATGGTTGGAATGACAACAGCTGCGATCGCCAATTTGGATTCATTTGCAAAATTAAAAATGATAATGGATTGGATAAAATCGAAGAATTTGATTTGGAAGATGATAACTTGATAACAACATTGTCATCATTAGAAAAAATTCATCGTTATAGTTTTTTAACTGTTGTTTTACTAGATTCATTAAACGATTGTTTTTCTTTAGATACAAATGTTCCTAACATTAAACGTTTGACATATCAATGTCCGGATGAACTGAAAACTGGAAAATTCGCAAGAATACGACCACTTAAAAGAGTCGTTTAG

Transcript

HOLI00831.g29606.t1

Protein

Uniprot

Uniprot term	Description
P20693	Low affinity immunoglobulin epsilon Fc receptor OS=Mus musculus OX=10090 GN=Fcer2 PE=1 SV=1
P22897	Macrophage mannose receptor 1 OS=Homo sapiens OX=9606 GN=MRC1 PE=1 SV=1
Q9UBG0	C-type mannose receptor 2 OS=Homo sapiens OX=9606 GN=MRC2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF00086	Thyroglobulin_1	Thyroglobulin type-1 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036857	Homologous_superfamily	Thyroglobulin type-1 superfamily	Interproscan
IPR000716	Domain	Thyroglobulin type-1	Interproscan
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR052065	Family	Complement and asymmetry regulator	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR018378	Conserved_site	C-type lectin, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22906	PROPERDIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-