Gene detail

Detailed information of HOLI00926.G11884 in Hydra oligactis

Genomic Location: HOLI00926:24949...100408
NR annotation: XP_012553723.2, integral membrane protein GPR155 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI00926.g11884.t1

ATGGCACAAGTAAATTTTAGCATTGTTAATTGGCAACTATGGACATCATTGTTAATCAGCAAATCCATTTTATTTTTTATTATTATTTTTGCTACAATATTTTTTGCAAAAGATAATAAATTTGGAAAAGCTGGTCTCTTCGCCATTTGTGTTACACAGTCAAATGATTTTGCATTTGGAATTCCTTTGTTTCAAGCAATATTCCCTCCAACGCCAATAATTTCTGACAGATTACATGTACTTAATTGCACCTTTGAGACGTTTTCTTTTCTTTATGGAACTATACCTGCAGCTCCAACTGTTGTTATTTTTGCCAGCAAATATCAGTTAGCGGAAGATGTTATTGGAAGTACTTTAATAATAAGTACATTATTTTCTGCTCCTATCATTTTCGCCTCAGTAAAAATGATTGAGGTCATAAACATGAAAGACATACAAATGTTTTTGGAAATCATTACACAAGTTTCTACTCAAATAAGTGTAATTCAACTAGCTTGTTGTGTTTGGGTCATGATAGTATTTTGTTGCTTGCAGTTATTCCGACATCCATTGTATAGATACACTCAAGCGCTTATTTTTTTTCAGCTATTACTTGGCATCTCTGTGATTATGCAAAGGCATACACACAATCGTTCAAGAGGATTTTCTGAGTTTATTGTGTGGATGTTGTTCACATCTTTTTACAGTTGCTGTGGGTCGGCTATTAATATAGCATTAAACTTGTATAGAGTATATTTACAAAAAAATACTTGTTGGATTTTTTCACTCACAGTTTATTTCATAATTTTTGTTATGACAACAATGTTGGTTATAAACTCTTCTACTATTATTGCTGGTATTGACAAGTCGCCTTCCTTTTTGATGTCAGCAAGTTTTAAGAATGATGATGGTATCCTTTTTATTATTGTTGGTATGACAACTCTCACTGTTATTATCATTGCTTTTGTCAAAATTAATCAAAATTACACAAATGATCATCGTGATTACTATCAACCTCTTGAAGAAAACAGAACAGATACTAGAACATCAATTAGTGTCAGTGTTCAAACAATAATGTCAAACTGGCTAAGTTCACGCTCTACAGATATAAAGTATGTTACAAACCATGTAATTTTATTGCTTGGTATTTCATTCATGATTGTCATTAATATTTGTGTATGTTTGTGGAACATAATTCGACCAACGCAAGCCAAAGGAATATTCTTAGGAGTTGAAATGCTGGCAGTAGTTTTAACATATGGCCAAGGATTTTTCTCGTTGGTTACTTTTGGTTTTCTAAAGGAATTTTTTATGCTTTCTGAAGTTATAAGGAATCATTGGATTGGTCCAAAAGTACAAAAATCACCTAGGCTACCGAATATTGATTTATTATTATGTCATAAATTTGTTAACGATCATCTAAGCCATTGTGAGGCAGATCTGTTGGACACAAGTTTCTTTATGTCTAAAGTACAGTGTACGCTTGCTTTACAAATCATCAATGATCATTTTGGAGATATCACAGAGCAAGTTGTGGCTTATCTTCTTCAAAATGGTCAGAGAAGCTTAAAAGATATTTGTGATAATGTCAAAATCAGTAGAGATGAGATAAAGAAAGTGTTAGTCATACTTATTCAACACAATCTCGTCAGTTTCAACAAACATAAAAACAAATATACCGAATATCAAACTGAACTTCATAATATTATTAGACGTAGATGTTTCCAAAGATATATATATTTTGCAAAACTAAAGCATGGTGACATAGGCGAGTTGATTATTGAAAAATTGTTATTGAATGGATGCGACACTCTCAGTAGAGTTGCAAAAAGAGTTACAGAGCGCTTAGAAGTTGATGATCCTGAAGAGCAGCATCCAGATCAATCAGTGGTTATAAAAAAGTGTAGTGATTTAATTTCTGCTCATTATTTAATGCGATATAAATGCTTAAACCATGCAAAAGATAGTAAAAAAGAAACAAAAGATATTAATCCGAATGATGTATTTTTATTTCCACAAGGTGTTGGTAAGAAGCGTAAATCACAAACTAAAACAGATGAACCTATGTCAAAGAAACGAAAAACTGACAGTGAAAAGGATGAAGAAACTAGCGATGAACAGTATGAGGATGATGGTGTCTACTGGTATGTAAATTTTGAAAGGTTGGATCAAGATTTTAATGACCAGTTAATAACCGAGCAGTTGTTGAACAATTGA

Transcript

HOLI00926.g11884.t1

Protein

Uniprot

Uniprot term	Description
Q7ZUX1	DNA-directed RNA polymerase III subunit RPC3 OS=Danio rerio OX=7955 GN=polr3c PE=2 SV=1
Q7Z3F1	Lysosomal cholesterol signaling protein OS=Homo sapiens OX=9606 GN=GPR155 PE=1 SV=2
Q5R9A7	Lysosomal cholesterol signaling protein OS=Pongo abelii OX=9601 GN=GPR155 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08221	HTH_9	RNA polymerase III subunit RPC82 helix-turn-helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039748	Family	DNA-directed RNA polymerase III subunit RPC3	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR013197	Domain	RNA polymerase III subunit RPC82-related, helix-turn-helix	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12949	RNA POLYMERASE III DNA DIRECTED -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005666	Cellular Component	RNA polymerase III complex	Interproscan