Gene detail

Detailed information of HOLI01031.G12996 in Hydra oligactis

Genomic Location: HOLI01031:201612...203261
NR annotation: WP_105262296.1, ribosome biogenesis GTPase YlqF [Rhodoferax sp. TS-BS-61-7]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
C5D8U8	Ribosome biogenesis GTPase A OS=Geobacillus sp. (strain WCH70) OX=471223 GN=rbgA PE=3 SV=1
Q819W8	Ribosome biogenesis GTPase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=rbgA PE=3 SV=1
D5DJL5	Ribosome biogenesis GTPase A OS=Priestia megaterium (strain DSM 319 / IMG 1521) OX=592022 GN=rbgA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02586	SRAP	SOS response associated peptidase (SRAP)	Family	Interproscan
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR019991	Family	GTP-binding protein, ribosome biogenesis	Interproscan
IPR003738	Family	SOS response associated peptidase (SRAP)	Interproscan
IPR036590	Homologous_superfamily	SOS response associated peptidase-like	Interproscan
IPR006073	Domain	GTP binding domain	Interproscan
IPR023179	Homologous_superfamily	GTP-binding protein, orthogonal bundle domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45782	MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0006974	Biological Process	DNA damage response	Interproscan
GO:0106300	Biological Process	protein-DNA covalent cross-linking repair	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0006412	Biological Process	translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14540	rbgA; ribosome biogenesis GTPase A	-	Ribosome biogenesis	ko03009	deepkoala