Gene detail

Detailed information of HOLI01139.G56647 in Hydra oligactis

Genomic Location: HOLI01139:52858...67355
NR annotation: XP_002162674.3, RGG repeats nuclear RNA binding protein A isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF04774	HABP4_PAI-RBP1	Hyaluronan / mRNA binding family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR039764	Family	RNA binding protein HABP4/SERBP1-like	Interproscan
IPR006861	Domain	Hyaluronan/mRNA-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13199	SERBP1; plasminogen activator inhibitor 1 RNA-binding protein	-	Spliceosome	ko03041	deepkoala