Gene detail

Detailed information of HOLI01374.G39959 in Hydra oligactis

Genomic Location: HOLI01374:142610...222065
NR annotation: XP_047136448.1, WD repeat-containing protein 75 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI01374.g39959.t1

ATGGGGGATGAAAAGCACAATGCTGCACCGAAAAACAAAATTAAAAAGAAGTTATCTGTTAAAAAACAGTGTATACCTGCAGATGTTTATTCGCATAAGTGTAACAAAAATATAATAAAAATCAAGCCTTTTATAACAGCAGATTCAAAGCATATAGTATGTGGTAGCGGAAGTAAAGTTTTGTTATATCGCTTAAAGACGGGCGTGTTAGAAAAGATTTTTGATGAACACGAAAAGGAGGTTATTGCAATATTTCCCAATGAAAAGAACCCTTTGCAAGTAATATCTTGTACTGAGGATGAGGTTGTTATGTGGGATTGCACTGATTTAAGTGTCTATAAGAAAATCATTCTTCCATGTAAAATATTTGATGTGTACATGCCAACAGCAAAAAGTGGAGTTACGATATATTTTGTTTCAGCTGCCGAAAAAACAGTAAATGAAAAAATCAAAAAAAAGGATAAATTTGTTTTGTTTCGATATAATGTGTTAACTCAAGAAAAGTTGTCAGTATCCGTTATAACCAGAGGTTATAAAAAGTTTGCGGTTAGTAAATGCGAGAGTTTTATTGCGATAATACACAGGAAAAACTTGAAAATATATGACTGCAATAAACGAAGCATCGTTGAGTATAAATATGATACAGTTAGTTTGACTTGTGTGGCTATACATCCTTCATCAGATATTATTGTGACTGGAGATGAAGATGGAAGATTAATTTTATGGAACAATATATGCGGAGAGAAGAAAGAACCGATTTGCTCTACGCTCCACTGGCATAATAATCATGTAAACGATGTGCTTTTTATGAACGATGGTTTTTATATAGTATCTGGCGGGAATGAAGGTGTGTTAGTTATATGGCAGCTTGAAAACCATAACAAAAATTATTTACCTAGAGTTGGTGGATCAATATTACACTTATTTCAATCCAATGATGCCCAACATATTGGCTTTGCTATTGATAGTAATGTCATCAAACTTTTATCGGTTCATGACAACAAGTTAACAAAGGCTTTGAAAGGATTCTCTATTGCTGATTGTTTTCCTGCTGGTATAAACTATGACTCTAAAACTGATTGTCTTGTTATGAATGGGAGACCTGACGGCATTATTCAGTTTTATCATCCGCAACAGGATTTGGGAAAACTTCATCTAGACGTTGTTGGGGAAAACTTAATCACTTCTGTCGAGTATCGTCATATATATCCTAGTCGCATCGATCGAATAGCTTTCTCTCAAGATAATTTATGGTTAGCAACTATAGTAACTCGAAAAGATGTACATCTACCCACTGAAAGAACATTAAAGTTTTGGAAATACTATAACAATAAATTCTACTTAAATTCTGTTGTTGAGCCTGTGCATACTGATAATGTGTATGTCCTGCTATTTCGCCCTCATAAATCGCACTATTATGTCATCACTTCGAGCAAAGACAGAAGCATCAAATCTTGGCAATTAGCTAAAGGAAAGACAGATAAAGGTAAGCAAATTAAAGCGTGGGAGTTGCATTCTGTAGCAACGTATGGTAAACAAAGTTGTCGCCAAGCTTGTTTTTCTGATGATGGATCACTGTTAGCTGCACTTTTTTCTGAAATAACAATATGGGATCCTGAAAGTCTTTCACTGGTGAGCACAATTAGTTGGAATTGTGACCTAGATCCAATCAAATCCCTTACGTTTTGTCATAAGGAATCTAGTAAGTATCTTATTGGTTGCTCTGACAACACTATCGTGTCTTGGAATGTTTCTACATTGGAAGTTGCTTGGAAAATGCAGTGTGAAGTAAAGTTAATAACATCAGATCCGTATTCTAAATATTTTGCAGCATTTGTTTGGTTCAAAAGAAATAAAAAAATGCATTTGTATCTTTTTGATCCTTGTACACCCAAACCTGCTGGACTCCTGTATGATGTACAACAAGACTACTTATCTCTTAAGTGTGCAATTTTTACTCCACGTCCAGATGACTGTTTTGGAAATACTATTTGGACTAAAATTGGATATTTATACTATCTCAATAATAATAGCATTATGAGGATAGTCGAAGCAGGAGAAATCAAAACAAAAAATAAAGAACCTATCATACAAATTGAAAATTCAGCCTTTACAGAAATATTTGGAGCTGCACAAAAACAAAATGTGAATATTAACAATAACACATCTATTCCTACTGGTAACACAGCTTCAACCATTATACAAAAGATACTATCAACCCCATCTCACGTTTTACCATCTACAGATGTGCTGTGTAAAGTCTTTTTGAAGTCCTTTCTTATCTCTAAGTCAAGCCATGCTGAACTAAAAGATACAAACAAAGATATTGAAGATGATAAAGATGATTTTTGTGAACAAGATCGCAAAATTTCAGAAGCTATAGCAGTTCCCCCTGTGCTCGAAGATCTCACTCCGGTTGATCTTATTAAATTACCTTCATATGATTTTGCATTCATAAAGGCGATGATTGAAACTTTGCTTGTATCCGCCGTTGCAGTTTCAATTCCAAATAGTTTAGTAATTAAAAATATGCAAATTGCCGCCATGAGCGTTGCAGAAAGTAACTCAGTAAAAACAGAAGAACATTTTTCAAAGGAGGAGCACATTGACGTTGTTTCGACCGTAAGTGTAACCAACTCTAAGCATCACTTTACATCAGATTATATTGCAAAAAGTATTTCTCGCCACAACGAAACTTTTTTATCTTCTGCGTATATCCCGACATTAATGTCTTTAGCTACATCAGAAAGTACCATTGGATATCCATCGCCAGATTATCGAAATTATAATTATAGGAATGGATCTCCACCTTACATCGATAAAGCCCCTACACTAAGTCAAAAAGATGACGGAAATCAAAATTCTGACCAACCTTCGCCTTCTAATACACCGTTAGAAGACAAACACGTATGGTCGAAAGCTGAAGTTGAGTTACTCTTAGACTTATATGAAAAAAACCAAGACCAACTTAAAGATCCACGCGTTAGAAAAACACGAGTCTGGGAAGATATTGCAACTGCCATACGCGAAACTCTAGATTCCGATGTAAATGGATGCCAATGCAACCAGAAGTTTCGTAATCTCAAAGCAGATTTCCAAAAAGTTCAGGAACACAACGGGCGCCCGGGAAACTTTAAAAGAATATGTAAGTACTACGATAGGTTAGTAAACTTATTGAACTACTCGCCTTACGCCCAGCAAAAAACGTTTTCAAACTCTATTAACGTTAACGGCGAAACGCCACACAATACGCCACATTATTTTGAAAATGAAAATATACCACCGCTTCCTTCGTTAAAACGTAAATTCAATGATATTTATTTAAATGGACATACTAACAATCTACTTTCTAATAGTCATATTGAAAATTTCCAATCGAAAAAACCACGCTCGCAATGTCAATGCGAGTGTAGCGAAGAGATTGCAAGTTTACGCGAGAGCATAGAACGGACAAATAGATACATTTTAGCGCGAGCAGCGCATGAAGATGATCGCGTTCGAAGGTTAGAAGATGTTCATCGTGAAAAGTTGGTTGCAATGAGTAGATTTGCCGATATTTTTAAAGATTACATTCATAAAATTGTATAA

Transcript

HOLI01374.g39959.t1

Protein

Uniprot

Uniprot term	Description
O13878	U3 small nucleolar RNA-associated protein 17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp17 PE=3 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13837	Myb_DNA-bind_4	Myb/SANT-like DNA-binding domain	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR011044	Homologous_superfamily	Quinoprotein amine dehydrogenase, beta chain-like	Interproscan
IPR044822	Domain	Myb/SANT-like DNA-binding domain 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44215	WD REPEAT-CONTAINING PROTEIN 75	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0045943	Biological Process	positive regulation of transcription by RNA polymerase I	Interproscan
GO:2000234	Biological Process	positive regulation of rRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14552	NAN1, UTP17, WDR75; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)	-	Ribosome biogenesis	ko03009	deepkoala