Detailed information of HOLI01405.G38024 in Hydra oligactis

Genomic Location: HOLI01405:23864...107384
NR annotation: XP_047136011.1, splicing factor 3A subunit 1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A2VDN6Splicing factor 3A subunit 1 OS=Bos taurus OX=9913 GN=SF3A1 PE=2 SV=1
Q15459Splicing factor 3A subunit 1 OS=Homo sapiens OX=9606 GN=SF3A1 PE=1 SV=1
Q8K4Z5Splicing factor 3A subunit 1 OS=Mus musculus OX=10090 GN=Sf3a1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01637ATPase_2ATPase domain predominantly from ArchaeaDomainInterproscan
PF14629ORC4_COrigin recognition complex (ORC) subunit 4 C-terminusFamilyInterproscan
PF12230PRP21_like_PPre-mRNA splicing factor PRP21 like proteinFamilyInterproscan
PF01805SurpSurp moduleFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011579DomainATPase domainInterproscan
IPR035967Homologous_superfamilySWAP/Surp superfamilyInterproscan
IPR032705DomainOrigin recognition complex subunit 4, C-terminalInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR022030DomainSplicing factor 3A subunit 1, conserved domainInterproscan
IPR035563DomainSplicing factor 3A subunit 1, ubiquitin domainInterproscan
IPR000061DomainSWAP/SurpInterproscan
IPR045146FamilySplicing factor 3A subunit 1Interproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15316SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0000381Biological Processregulation of alternative mRNA splicing, via spliceosomeInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0045292Biological ProcessmRNA cis splicing, via spliceosomeInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan

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