Gene detail

Detailed information of HOLI01529.G35426 in Hydra oligactis

Genomic Location: HOLI01529:171811...172801
NR annotation: MBI3887866.1, polyribonucleotide nucleotidyltransferase [Candidatus Microgenomates bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
B8CW78	Polyribonucleotide nucleotidyltransferase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) OX=373903 GN=pnp PE=3 SV=1
Q0AYI2	Polyribonucleotide nucleotidyltransferase OS=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) OX=335541 GN=pnp PE=3 SV=1
Q2JLJ5	Polyribonucleotide nucleotidyltransferase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=pnp PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01138	RNase_PH	3' exoribonuclease family, domain 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012162	Family	Polyribonucleotide nucleotidyltransferase	Interproscan
IPR027408	Homologous_superfamily	PNPase/RNase PH domain superfamily	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR036345	Homologous_superfamily	Exoribonuclease, PH domain 2 superfamily	Interproscan
IPR001247	Domain	Exoribonuclease, phosphorolytic domain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11252	POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000175	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004654	Molecular Function	polyribonucleotide nucleotidyltransferase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006401	Biological Process	RNA catabolic process	Interproscan
GO:0006402	Biological Process	mRNA catabolic process	Interproscan