Gene detail

Detailed information of HOLI01917.G47926 in Hydra oligactis

Genomic Location: HOLI01917:120784...140756
NR annotation: XP_002154798.3, 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI01917.g47926.t1

ATGGCGGATGATCTTGGTGATGATTGGTGGGAAAGTACAGAAATTGTTTGCGAGGATGGAAAAAGTGATCAAGAACTAAAACTTTCACACGTTACACTATCTGATTATGTTCCACCCTCACATGTTCCAATATCAGATTATGTTCAATATTTTACATTGTTTTTCTATGGCTGTTTACCAGAAGTTTACCCCTTCTACCAGAAGTATATAAGGGATTTAAAATCTGCAAAGGAAATAAAGAAGAAAAAGAAAACATCAATAGATAAAATGAATGGTGATACAAAATTTAAAAAAAAAGAGAAAAAAAAGCAAAAAAGAAAGAAACCTACTGCTCTCACGGAAAATACACCTGCACTAAATGTAGAAAGTCTATGGGCATACTTTGAAAAAGAACTTGGAAAAACTTTATCAAGCATTGAGTTAGAGGATATAAAACCTGATCATGATTCATGGGTAATTGGAGAAGATTCTACAACAGATACCAATAAAAACTTTCAGCTTTCATCTTATTTAAAAACAATTGTACCTAATTGGGAAAAAGATTGCAAAAAAGTCCAAAATAAACCAGGTTCACCAATCATGTTAATAATTACATCAGGCGGACAACGTGCAGCAGATTTATTGAGAGAAACATCTGATTTTCGTGGTAAAAATTGCAAAACGATGAAGTTATTTGCTAAACACTTCAAGATAAACGAACAAGTGGAATTTTTAAATAAAAACCCCATCCACCTTGGAGTAGGGACCCCAAACAGAATTGTAAAGCTAATTGAATTAGGAAATCTTTCAATAAAATATCTGAGTCATATTATAGTTGATTGGTCCTGGAAAGATGACAAAACTAGGAGTATATGGAATATGCATGGAGTAAAAGATGACTTTCTTAATCTTTTTCAAAAGTACATTCTTCCAAAATACGAAATGAATAAATTAAAAAAAATCAATTATAAAATATTATTCAATGTTAACTTGCAGAGAAGAAATTCTTCGGCTTTCTCATTTGTTCCAGAAAAAATTCCAATTGCAGGTGAAACGAAGAAAATGAATTTGTTTCAGTCAGTTACAAATGCATTAGATCTTGCACTGGAAGCAGATAAAACAGCATTGATTTTTGGGGAAGATGTGAAGTTTGGCGGCGTGTTTAGGTGCACCATGGGTCTTGCTGATAAGTATGGAACAAGTAGAGTCTTCAATACTCCGCTTTGCGAACAAGGTATTGTAGGGTTTGGCATTGGTGTTGCTGCAGCTGGTTCTACAGCTATTGCTGAAATTCAATTTGCTGATTATATATACCCTGCATTTGACCAGATTGTCAACGAAGCAGCAAAGTTTCGGTATCGATCTGGAAACTTGTTTAATTGTGGGTCACTTACCATCAGAGCACCTTGTGGAGCTGTAGGCCATGGTGCATTATATCATTCACAAATGCCAGAAGCACACTTTTCACACACTCCTGGCCTCAAAGTTGTCATTCCTAGAAGTCCTAGTCAGACTAAAGGACTACTTTTAGCTTCCATTCGAGATCCAAATCCTGTAATTTTTTTGGAACCAAAAATTTTGTACAGACAAGCAGTTGAGGAAGTCCCTTTAAAGGATTACGAACTACCATTATCGAAAGCTGAAGTTGTTGTAGAAGGTAGTGATGTTACTTTGGTGGGTTGGGGTACTCAGTTTCATGTGCTTCGTGAGGCTGCTCAAATGGCTAAAGAGAAACATGGCATTTCGTGTGAAGTTATTGATCTGCGTACCATTTTGCCTTGGGATGAGGAAACCATCATTAAGTCGGTAATTAAAACTGGTAGACTTGTTATTGCGCACGAAGCTCCCATAACGGGTGGATTTGCTGGAGAAATTGCCGCAACCGTTCAAGAAAATTGTTTTCTTAACTTAGAAGCTCCTATTCAGAGAGTTTGTGGTCACGATACTCCATTTGCGCATGTTTTCGAACCATTTTACTTACCTGATAAGTTTCGTTGTTTTGAAGCAATAATAAAAGTGACCTCGTTTTAA

Transcript

HOLI01917.g47926.t1

Protein

Uniprot

Uniprot term	Description
P21953	2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=BCKDHB PE=1 SV=2
P21839	2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus OX=9913 GN=BCKDHB PE=1 SV=2
P35738	2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus OX=10116 GN=Bckdhb PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14617	CMS1	U3-containing 90S pre-ribosomal complex subunit	Family	Interproscan
PF02779	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan
PF02780	Transketolase_C	Transketolase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005475	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan
IPR029061	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR009014	Homologous_superfamily	Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II	Interproscan
IPR032704	Family	Protein Cms1	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR033248	Domain	Transketolase, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42980	2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005947	Cellular Component	obsolete mitochondrial alpha-ketoglutarate dehydrogenase complex	Interproscan
GO:0007584	Biological Process	response to nutrient	Interproscan
GO:0009083	Biological Process	branched-chain amino acid catabolic process	Interproscan