Gene detail

Detailed information of HOLI01919.G39016 in Hydra oligactis

Genomic Location: HOLI01919:71086...106876
NR annotation: XP_012556964.2, serine/arginine repetitive matrix protein 1 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI01919.g39016.t1

ATGGCTGATGCGGGATTCTTTAGGGGTACCACTTCTGAACAGGACTCTCGCTTTGCTGACAAAGAAAAAAAATTGATGAAAAAAATGAAATTTGATCCGCTGTTGACATCAAAGGTTGATATGGAGAAAGTTAATTTGGATACCATTAAACCCTGGGTGCAATCAAGAATTACTAGTTTACTTGGTGGTATAGAAGATGAAGTGCTAATTGGTTATATTTATGAACTGTTGGAATCTCAGCGATATCCAGATCCCAAATCGCTTCAGATATCTGTAACTGGATTCTTGAATGGTAAAAATGCACGTATATTCATGGGAGAGTTATGGGCGCACCTTGTTAGTGCTCAAACAAGTATAGCTGGAATTCCAGAACAGTTTTTAGAGAAGAAAAAAGAGGAAATTCTTATTCGCAAGCAAGAAACAGAGCGTATTACTGCAAATTTGCAGAAAACTCAAGCAGTAGAGGCAGATAGTACGGAGCCAGAATCTAAACCGCCAAAACAAAAGAGCAAGCAACCTGTATATAAAGAGGCTTTAACAATTGGTGTTGTACCTCCTTCAGAGTACGGAACACCAGCTATGAAGGATCAGCGAGAAATTCGCAAATCATTAACTGGTTACATGTCTTCTCCGGCCTGTACCCCAGTATGTAGGGATAAAGCTGGTTGGTATGGGGAGCACGAAAAGCATGTTGAAATAGCTAAAACATCAAGTGCATGCGTTCTACTTATTGGAGATTCAATTATTCAGGGGCTTGCGCGGTATCCAAAAATATGGAACAAGTACTTTTCACCATTAAAATCTTTAAACTTTGGCTTAGGTGGCGATAGAACACAGCATGTACTATGGCGAGTTGAAAATGGGGAGATCCCTTTAAATGCTCAGACAATTGTTATTCATGTTGGTACTAACAATACTGATAGAGATAGTCCTAAAGATATTGCTAACGGCATTGGATCTATTGCTATGATGTTTCAAGAAGCAAAACCTAATGCTAAAATTATTTTAGCAGGACTTTTGCCACGAGATTTGCAACCATCTTTTAAAAGAGAGCAAACAGCTAAAGTAAACAAATATCTAAAAAAACTTTGTAAAAGTGGTCACATAAGAAACTTTTATTATTTAAAGCCTGATGCAGATTGGGTTCTATCTGATGGTACTTTAAACACTAAGTACTATTTTCATGATCATTTACATTTAGTAGAAGAGGGTGATGAAAAGTTTGGTAAAGCTATTTTTGATATAATTACAAAAATTTATGGAGGAGTTAAAATAGAAATGTCCTCTGATTCTGAACTGAGTGATGACTTTGCTAGTGGTAAAAATTTCAAAATCACTAAACAGGTTGGTCGTCCACGAAGTATTTCTCCTGGATATCGAAGACGTTCTATTTCAAGATCTCCAAGAAGGTACTCTAGATCGCCAAAGAAGTCGCGAACAAGATCACGCTCTCGTTCACCAAGGCGTCGATCTCGTTCACCTAGAAGAAGGTTTTCTCAGCGTGGTTCTTATGGGCGCAATAGACGTCGTTCACGTTCTCGTTCTTATTCCAGATCACCAGTTAGACGAAATAAAGGAAGATTATCAAGTCGTTCACCTGATGTACACCATTCAACATCAGTTAACACAATTACTAAAGAACAAGCTAGAAGCATGTCTCCGAGGACCTCATCAGATGAGGAGCTTGTTAAGATTCAGCCTGCTGATGAAGGATTAATGAAAGAAGTTGATGAGATTCTTTTAAAGAGTGAAACATCTCCTCTCCAGTATCAAAAATCTGGTAAAACACAAAATCGAACATACAGACGCCAACAATCTGAATCTGATATTGATAATGCTGATGCTAGACCAGCTAAATCTGAAATAAAGACAGAATCAAGATCTCCTATAAACAAGAAGCGACCTCGTTATCCGTCTCCTCAAAGAGAAAAATTTGCAAGACGAGAGTCTCCAAGACGAGAGTCTCCACGACGATTTAGAACAAGGCCTTCAAATTCTCCTCAACAAAAGTCACCTTTACGATTTAAACGGTCAGAGACATTTTCTCATTCTCCACCAAAGAAATTTCGAGCGTCAAAGATCACCTATTCCTTCTAA

Transcript

HOLI01919.g39016.t1

Protein

Uniprot

Uniprot term	Description
Q52KI8	Serine/arginine repetitive matrix protein 1 OS=Mus musculus OX=10090 GN=Srrm1 PE=1 SV=2
Q8IYB3	Serine/arginine repetitive matrix protein 1 OS=Homo sapiens OX=9606 GN=SRRM1 PE=1 SV=2
Q5R5Q2	Serine/arginine repetitive matrix protein 1 OS=Pongo abelii OX=9601 GN=SRRM1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13472	Lipase_GDSL_2	GDSL-like Lipase/Acylhydrolase family	Domain	Interproscan
PF01480	PWI	PWI domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002483	Domain	PWI domain	Interproscan
IPR052225	Family	Serine/arginine repetitive matrix	Interproscan
IPR013830	Domain	SGNH hydrolase-type esterase domain	Interproscan
IPR036483	Homologous_superfamily	PWI domain superfamily	Interproscan
IPR036514	Homologous_superfamily	SGNH hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23148	SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0048024	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19142	cmr6; CRISPR-associated protein Cmr6	-	Prokaryotic defense system	ko02048	deepkoala