Gene detail

Detailed information of HOLI01928.G28134 in Hydra oligactis

Genomic Location: HOLI01928:33149...33361
NR annotation: WP_031565533.1, MULTISPECIES: cold-shock protein [Chromatiaceae]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
P0A358	Cold shock-like protein CspLB OS=Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) OX=272626 GN=cspLB PE=3 SV=1
P0A357	Cold shock-like protein CspLB OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=cspLB PE=3 SV=1
P0A356	Cold shock-like protein CspLA OS=Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) OX=272626 GN=cspLA PE=3 SV=1

Gene family	Subfamily
Transcription Factors Family	CSD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR050181	Family	Cold shock domain-containing protein	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR019844	Domain	Cold-shock (CSD) domain	Interproscan
IPR012156	Family	Cold shock, CspA	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03704	cspA; cold shock protein	-	Transcription	-	deepkoala