Detailed information of HOLI01938.G55985 in Hydra oligactis

Genomic Location: HOLI01938:123681...180914
NR annotation: NP_001267795.1, nuclear factor of kappa light polypeptide enhancer in B-cells [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P98150Nuclear factor NF-kappa-B p100 subunit OS=Gallus gallus OX=9031 GN=NFKB2 PE=1 SV=1
P25799Nuclear factor NF-kappa-B p105 subunit OS=Mus musculus OX=10090 GN=Nfkb1 PE=1 SV=2
P19838Nuclear factor NF-kappa-B p105 subunit OS=Homo sapiens OX=9606 GN=NFKB1 PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyRHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16179RHD_dimerRel homology dimerisation domainDomainInterproscan
PF00554RHD_DNA_bindRel homology DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR032397DomainRel homology dimerisation domainInterproscan
IPR000451FamilyNF-kappa-B/DorsalInterproscan
IPR011539DomainRel homology domain, DNA-binding domainInterproscan
IPR014756Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR008967Homologous_superfamilyp53-like transcription factor, DNA-binding domain superfamilyInterproscan
IPR002909DomainIPT domainInterproscan
IPR037059Homologous_superfamilyRel homology domain (RHD), DNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24169NUCLEAR FACTOR NF-KAPPA-B PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09254REL; c-Rel proto-oncogene protein-Transcription factorsko03000deepkoala

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