Gene detail

Detailed information of HOLI02137.G15398 in Hydra oligactis

Genomic Location: HOLI02137:70353...72721
NR annotation: WP_063462715.1, DNA mismatch repair protein MutS [Acidovorax sp. GW101-3H11]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI02137.g15398.t1

ATGGGCGAGTCGGTGGCGATTGCCGAACAGGTGGGCGAGGTGGGCGCCACCAAGGGCCCGGTGGAGCGCAAGGTGGTGCGCGTGGTCACCCCCGGCACGCTGACGGACACCGAACTGCTGTCCGACAAATCCGAATCGCTGCTGATGGCCGTGCACCAGGCGCCGCGCGCGCTGCGGCCTGGCGTGGCTGAGCGTGACACAGGGCCGGGTCTTCCTGGCCGAATCGCGGGCGTGACCGAGCGCTTCGAGCAACAGTTGCAGGTGCTGCGTCAAAGCGGCGCCTTCACCTGCCCCATGAGCCCCCGGCCCGACTGGCAGTTCGACAGTGCCCTGGGCGAGCGCAAGCTGCTCGAAAACCTGGGCGCGGCCAGCCTGCAGGCCTGGGGCGCGCAAGACCTGGGCGAGGCCCATGCCGCCGCCGCCGGGCTGCTCACCTACGCCGAACACACGCAAGGCCGCACGCTGACCCACGTGCACAGCGTGCAGGTGCAGCGGGGCGACGACCTCATCGACCTGCCCGCCACCACGCGCCGCAACCTGGAGCTGGTGAAGACCCTGCGCGGCGACGACGCGCCCACGCTGTTCTCACTGCTCGACACCTGCATGACCGGCATGGGCAGCCGCCTGCTCAAGACCTGGCTGCTGGAGCCCCAGCGCGACCGCGCCGAGGCACGCCAGCGCCTGGCGGCCACCACCGCATTGCGGGGCGCGGGTGGCGCCGGGGGGCGGATCGGGCCCCTGGGCCACGCTTCGAGGCGAATTGAAGGGCGTGAGCGATGTGGAACGCATCACCGCCCGTATTGCACTGCGCCAGAGCCATTTTTGGTTCAAATTTTTGGCCACCTGCATCCGCCCGAGGGCTGCACGGCGCTGCTGCAGGCCGCCATTGCCGAAGAACCTGCCGCCCTGGTGCGCGATGGCGGCGTGATCGCCACGGGCTTTGACACCGAGCTGGACGAGCTGCGCGCCATCCAGACCAACTGCGACGCCTTTCTGCTGGAGCTGGAAACGCGCGAGAAGGCGCGCACCGGCATCGCCAACCTGCGCGTGCAGTTCAACAAGGTGCACGGCTTCTACATCGAAGTGACCAGCAGCAACCTGGACCGCGTGCCCGACGACTACCGCCGCCGCCAGACGCTGAAGAACGCCGAGCGCTTCATCACGCCCGAACTCAAGGCCTTTGAAGACAAGGCCCTGTCGGCCAACGAGCGCGCGCTGGCGCGCGAGAAGTGGCTGTACGAGCAGATCCTGGACCAGCTCCAACCGCATGTGCCCGCCCTCACCCGCCTGGCGCAGGCGCTGGCCACGCTGGACGTGCTGTGCACGCTGGCCGAGCGCTCGCTCACGCTGAACTGGTGCGCGCCGCAATTCGTGCCCGAGCCCTGCATCGAGATCGAAGGCGGCCGCCACCCGGTGGTCGAAGCCCGCCTGGCCGAGACATCGAGCGGCAGCTTCATCGCCAACCACACGCGCCTGAACGCCAACACGCGCATGCAGGTCATCACCGGCCCCAACATGGGCGGTAAATCGACCTACATGCGCCAGGTCGCGCTCATCGTGCTGCTGGCCAGCATGGGCAGCCACGTGCCCGCCGCCAGTTGCCGCCTGGGGCCCATCGACGCCATCCACACCCGCATCGGCGCAGCGGACGACCTGGCCAACGCGCAATCGACCTTCATGCTGGAGATGACCGAGGCCGCGCAAATACTGCACGCCGCCACACCGCACAGCCTGGTGCTGATGGACGAGATTGGCCGCGGCACCAGCACCTTCGACGGCTTGGCACTGGCCAGCGGTATCGCCACGCACCTGCACGACAAGACCCGCGCCTTCACGCTGTTTGCCACGCACTACTTTGAGCTGACCGAGTTGCCCGCCAAGGCACGCCACGCGATCAACATGCATGTGAGCGCCACCGAGAGCGGCACGGACATCGTCTTCTTGCACGAGATCCAGCCCGGCCCCGCCAGCCGCAGCTACGGTATCCAGGTGGCCAAGCTGGCGGGCATGCCGTCGCCCGTGCTGCACCACGCACGCCACGCGCTGGCGGCGCTGGAAGAGCGTGCAGGCGAAGACGAATTGCAAGTGGACCTGTTCGCCGCGCCCGAGGTGCCCGAGAGCGCGGGCGCCAGCCCGGTGGAAGCCGCGCTGGCCAACATCAACCCCGACCAGCTCAGCCCGCGCGAGGCGCTGGATGCGCTGTACCAGCTCAAGAAGATGGCGGGCTGA

Transcript

HOLI02137.g15398.t1

Protein

Uniprot

Uniprot term	Description
A1WRJ3	DNA mismatch repair protein MutS OS=Verminephrobacter eiseniae (strain EF01-2) OX=391735 GN=mutS PE=3 SV=1
A1TNU7	DNA mismatch repair protein MutS OS=Paracidovorax citrulli (strain AAC00-1) OX=397945 GN=mutS PE=3 SV=1
Q21XE3	DNA mismatch repair protein MutS OS=Albidiferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) OX=338969 GN=mutS PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05192	MutS_III	MutS domain III	Domain	Interproscan
PF00488	MutS_V	MutS domain V	Domain	Interproscan
PF05190	MutS_IV	MutS family domain IV	Domain	Interproscan
PF05188	MutS_II	MutS domain II	Domain	Interproscan
PF01624	MutS_I	MutS domain I	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007696	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR000432	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR036187	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036678	Homologous_superfamily	MutS, connector domain superfamily	Interproscan
IPR045076	Family	DNA mismatch repair MutS family	Interproscan
IPR016151	Homologous_superfamily	DNA mismatch repair protein MutS, N-terminal	Interproscan
IPR007861	Domain	DNA mismatch repair protein MutS, clamp	Interproscan
IPR017261	Family	DNA mismatch repair protein MutS/MSH	Interproscan
IPR007860	Domain	DNA mismatch repair protein MutS, connector domain	Interproscan
IPR007695	Domain	DNA mismatch repair protein MutS-like, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03555	mutS; DNA mismatch repair protein MutS	-	DNA repair and recombination proteins	ko03400	deepkoala