Gene detail

Detailed information of HOLI02150.G23136 in Hydra oligactis

Genomic Location: HOLI02150:48354...49157
NR annotation: WP_124510515.1, DeoR/GlpR family DNA-binding transcription regulator [Acidovorax sp. FJL06]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P0ACK4	Putative aga operon transcriptional repressor OS=Escherichia coli O157:H7 OX=83334 GN=agaR PE=3 SV=1
P0ACK3	Putative aga operon transcriptional repressor OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=agaR PE=3 SV=1
P0ACK2	Putative aga operon transcriptional repressor OS=Escherichia coli (strain K12) OX=83333 GN=agaR PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08220	HTH_DeoR	DeoR-like helix-turn-helix domain	Domain	Interproscan
PF00455	DeoRC	DeoR C terminal sensor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001034	Domain	DeoR-type HTH domain	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR018356	Conserved_site	Transcription regulator, HTH DeoR-type, conserved site	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR050313	Family	Carbohydrate Metabolism HTH-type Transcriptional Regulators	Interproscan
IPR037171	Homologous_superfamily	NagB/RpiA transferase-like	Interproscan
IPR014036	Domain	DeoR-like transcriptional repressor, C-terminal sensor domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30363	HTH-TYPE TRANSCRIPTIONAL REGULATOR SRLR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan