Gene detail

Detailed information of HOLI02826.G30342 in Hydra oligactis

Genomic Location: HOLI02826:88526...121522
NR annotation: XP_047132298.1, girdin isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI02826.g30342.t1

ATGCTTAAAAAAAGTGAAGAGGATTACAAAGTGGCAGCTCAAAGCTTGTGTACTCTTGAAGCATCAATTGTTGATCAGAGCAGCCTCAGTAAACTGATCAAGCTAAAAGAAATTAAGTTAGAAAGCACGCAGAACGCAATAGATGAAAAAGATGACTGTATTGTAAAACTGGAAGCTCAGTTATTAGACAGTGTTGGAAAGATAAAGAGAATTGAGCAACTTATTAAGTTAAAAGAAGGAAAACTTCAACAGGCTGAAAACAATATAGAGAAGTTAGAAGATGTTGAGGCCAAAAATGCCAAACTGAATGCTTTACTGCAACAAAAAGAGCAAAAGATTTTACAACTAGAAGACAATATGGATGAGCTTGGTGAGTTGGCAAGATTAAATAAACGCCTAAAAGAGCATTCTTTACTCAAAGACAAAAAAATTGAAAATCTAGAAGAAAGAATTCATACTTTAGAAGAAGCTGTAAAAATGAATGAAATATTGAATCATCAAGTCAAGTTAAAAGAAGAAAATATTCTGGTGCTACAGGAAAAAGTTTATGAATTAGAGATTCAACTACAGAAATCTGAACAAGTTAGAGAAATCATAAAAAAGAATGCGGAATTAGAGATTTTAAAGCTTAACCAAGAGGTGACAGAATTTAGTGATTTTAAAGTCAAAAGACAAATGAGTTTATTACGGAGAGATCAAAAAATTACCAATTTAGAATCTAGATTAAACAGTTTTGCAGAAGAGCGACAACAAAAGGATTCATTTATTCAGGATTTACAATCAAAACTAGAAGGTACAATGCTCCAATATCGAAAACTTGATCTCAGCAACGAAGAGAAGGACCAAAAACTAGTTGATCTTGATATGAGGGTTAAAGAGCTAATGCACACGTACAAAGAAAATCAAAAACTTTCAAAAACTCTTCAAGTTAAAGAGGAAGAAGTTCATGAGCTTGAAAAAAAAATTGAAGATTTTGAAGAAAGCAGAAAGCGAAGTTTGCAGCAACTTGAAAATAAAGAAAAGAATATAGTTGAATTGCAAGAAAGACTGCAGGAGACTCTTATGTTCAATAACCGTTTGAATTGCAGTGTAAAAGTAAGCGAAGTAAAGATTAACGAGCTAGAAAAACAGATACTTGATCAAGAAGAACTTGTAGAAAAACTATCGTCTTCAATAAAAACAAAAGATAGGACAATTGAGAGAAACAGTTCAAAATTAAAAGAACTTGAAGAAGAGTTTAAAAAACAGGTGTCCGAGCTACAAAATGAGTTAGACAACAGCAAAAAATTAGCAGAAGAATTAAGGGCACCAAATGAAAAGGAAATTGCTGCAGCAAAGCAAATTGCAGATCTGTTGAAAATGTTAGAAGGTCAAATTGAGCTGAAAAAAGAAGCGGACCTGAGGGAAGCAGAACTTAAAAAAATAATTAACGAATTAGAAAACGAAAAGCATAAATCAAAATTGACTTTACAAGAAAAAGATGGATTTATTGTTGATTTAGAAAGAAGAATTGAAGAACTGCAGTTTACACTCTCTGGAAGCGATAAGTTAAATTTTATACTAAATGAAAAAAATAATCAAATCACAATACTGCGTCAGAGTTTGGACGAATACCAAAGATTTAATGCACAACTTGAAACAAGGTTAGAAGAAGTAACTTCAGAGCGCAATCGTTTTATGTCAGCTATAAAGCTGCAAGAGGAACGTTTAAAAACATTAAAAACTCAGTTGGAAGAGTATGTTAAGCTTAACCATAAGAGGAGCAATGATCTTCAACTTAAAGAAGAAACTCTTATTTCTGTTACAAACAGCCTCAATGAAATGACACGAAGAAATAAAGATTTAGAAGAGGATATTAACTCGTTAGAAAAAGATCTACATGATCTAAAAAGTACTGAGTTTTTAAATGAATCATCTTTTAGAACTGAGCTGCATATTCAACGAGGACCAATCACATCTTCTAAAATGATTGAAATAAAAATGTTGTCCGTTAAACCAGAAGATGTTGTTAATGAAAAAAATGAAGTTATTGAGAGACTTCAAAATGAAATTAATATTTTAGAGAAACAGAAATCTCACATATCAACATTGATGTCAACTATTTCCATGGAAAATGCTTTGTATCTTAGCGAAAACGAATCGTTGAAAAGTAATTATGAGCTTCTTACTCTTGATTATGAAACCTTGCAAAAGGAAATGAGCGATGTAAAAAATCAATTTCAAGAACTTGATATATCTGCTACCAAGATTGCACAACGTTGTGAACTCCTTGTTCAAATGAATAACACTTTAGATGAGGAAAATAAAGCTTTAATTGATCAGAACAACAAACTAATATTGCAGAGTAAAGAGTTGCTGTTTTCAACACTTCAATCCCGTGATCAGTTTTTAGATGATGAAAGAATATTCTCTGACCATATTTACGGTTTGGAGCGAGAAAGAGAAATATTAGCAGAGAAAGTTCAGGCTGCTGAACGAGCTTTACAAGACACTGGAAATAAAAAAAAAGGTGCTCTTTGGCGCGGAACAAATAAAATTTTCAAGAAAGTTGGTTTAAAAAAGAAAACATCTAATGCAGATATAGGAGAGTTGAGTTTATCTAATGATGGGCAGTTACCAATCAGGCCAAAAGTAACATCAGCAGACTCTGTATTAAAAGCCCCAACTCCAACCACAATACGTGGGTTAGTCTCGAAAAGTCGAGCAGATGTTACAAATATTGATCATGAGAAAAGACAATCCTTTATCAATGATGGTTCATCAGAAAGTGATACGTCGAGCAAATATGGCTTCAAAAAACGTCCAAAATCTGAGTTCTTTGGTTTTAATGAGAGCCCTTCAAGTAAAAGAAAAGATTTATTTCGAAGTTTAGAAAATGTCAGTCAATCTGGTATTTCTTTTCAAGATCCACTTGACTTTTCAACGAGCTCTTCTAATGAACGCTCGTTTCCTTCACACGGACAGCATTTTGAAGAATACAAAATGACTAGTCCTTCTAAAACATCGTCCATTGGAAATCAGTCTGATAGATCATCTGTTGACGGTCGAAATACTCCTGTACAAAGTTATTCTAAAACATCATCCAATGGAAACCCGTCTGATAGATCATATGTTGAAGGTCGTAGTACTCCTGTACAAAATCATTCTAAAACAACATCCAATGGAAACCCGTCTGATAGATCATCTCTTGAAGGGCATAATACTCCTATTCAAAAAGTTCTTGTTAAACAAATTAGAACAGCAGAAGTTTTAAAAACTCCAAAAGACAACGAAGTTTTAACAGAGTGCTTAGACTACATGGCGCAGGAGAAGGTAGAAGATTTTCCAGACCGATCGTTAAGTTTTATTTCTTCAAATGAGACAAATCAGACGTTTGAAAATCAAGACGAACACACCGAAAATTCTTCAGGTGAAAAAATGCGTCGCTCTTCGATGCCTCTTAATAATGATAATAGACCCTATGAGGTTTTGACAGACAATCGTGGATCGTTTTTTTTCCAAAGAAGCGATTCCGTTAGAAGCTCTCGAAGTAACAGCAAATTAATAGAAACGTCGGAAAATAAACGACAAGATAAGCAAAATATATTCTATCAACGGGATTCGCGTGGTCAAAGTTTATCTCCTCCAACTCCTATGTATTTTGGGAACCGAGAACAGCGATCTTCTTTTCGGCGTTATGAAATAGAGCAGATGGAGCCCCGACCGCTCAACAGTGATACTGAAAAGGAATCAAGCAACTTTATAGACGGCAATCGTAATAGAAACAAAAGCATAAATTCAGAAAACAGCGACGAACAGCAGACCTCTTTTCGACGTAATGACTCTATTCGTCAAAGCAAACGCAAAACTTGGTACGAATACGGAAACGTTTAG

Transcript

HOLI02826.g30342.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
-	-	-	-

PANTHER

PANTHER term	Description	Source
PTHR18947	HOOK PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005813	Cellular Component	centrosome	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0030705	Biological Process	cytoskeleton-dependent intracellular transport	Interproscan
GO:0031122	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0051959	Molecular Function	dynein light intermediate chain binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25392	CCDC88A; girdin	-	Cilium and associated proteins	ko03037	deepkoala