Gene detail

Detailed information of HOLI03032.G4356 in Hydra oligactis

Genomic Location: HOLI03032:37322...110967
NR annotation: XP_002156656.4, PAX-interacting protein 1 isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI03032.g4356.t1

ATGAATAAACCAAATATATTTAAAGGTGTTAAATATTTTTTCACAGCAGACAAAGAGGAACTCAAACAATGTTTAAAAGATGGTGGAGCGATGAGAGAGTTTTATATCAGTGATTTAGTAACACACGTTATCTCTGATAGCACTGATTTCCCTCAGTTGAACCAAGTCGTCGAAAGCAAGATACCAATTGTTACTAGCAATTGGGTGCACATGTCTGTAAAATGTGGAATAATGTTACCCACTAAACCTTTTTCACCAATGGCTGATGGTTTATTTCAAAATATGGTTTTTTGCCCTTCACAGATTCCTGTAAAGGACAGGGAACTTTTGCTTGCCATGATTGTATTTCATGGTGGAGTGTACAAGATTAACTTGACAAAAGATTGCACTCATCTTGTTGTTGGACAGCCGTATGGTAGAAAATATGACTTTGCATTAAAACATCCACAACTCAAGATAGTCACTGCTGATTGGGTTGTTGACTGTTCAAAGGAGGAGCGTATTTTGCCTGAGGAGGAGTATGCTCCAACTTTATCTCAACAATATCCAAGGCCAGCCGCACTTTTTGATGGAAACAGGGAATGTTTAGAAAAAGTAGATGAAAACTTAGAAAAAGTACCAGAACAGTTGCTGGCAGGCTGTGTCATTTTCTTTAGTGGTTATGAAGATAGATTGCAGCCTCTAGTTTACCAAGTGTGGAAAGATGTGATAAGGAAAGCATCAGGTCAAATAGATGAAACATATTCTGACAAAGTTACACATTTTATTTGTTTGCACCAACAAGTTCCATTTTTCAAGAAGGCTCTTGCAGAAAAAAAGAAGATAGCAACAGCTTATTGGTTAAATGATGTTTTAGTTGCAAAAAGGCTTTTTGCTCCTAATACTCCATTGCACCTTCCTTCACCTTTCACTGAAGTTATTGCAGATATTCAAAACAGTCTTGTCACTGTGAGTGGGTATAATGGTCATGAGCGTTTACTTGTCAAGCATATGATTAATTTCTTGGGTGCACACTATACTGGTCACATGACTCGCTCGCACACACATCTTATATGCAAAGCACCTTCTGGTGAGAAGTTCAAAAAAGCTGTAGAATGGCAAATCCCTGTTATAAGCGCTAGTTGGCTAGGAGACATGCTACAAACTGGTCAGTCATTTCCAACAAATGCCAAATCAAAATACACTGCACTTGGCCTTAGTGACGAACTTTCAATAAATCAAACATTTTCTTCATACATCACTGAAGCGTGGAATAAAACTTATCAAGAGGAAAGAACGCAGAATTTAAATCAGGCTGAAGAAAAGTTAAGAAAGTTGGACACATCATCTGGAGTCAAGCGGGTATTATTTACCGGACTAACTGGAAATATAGTTTATCGCCTTCGGCAGAATGTACAAAAAATGAATGGTGAACTGGCGCATGGTGTCAATGACTGTACACACCTCGTTGCACCAAAGATCACCCGAACAGTGAAGTTTCTTTCTGCTGTCTCTATTTGCAAATTCTTAGTTGCACCTGCCTGGGTAGATGATTCATTTGAAGCACAGAAGTTCTTAGAAGAAGCTCCTTATACATTAGTTGATCCGGAGTCAGAAGAGCTGTTTGGGTTCAAATTAAGGCGATCTTTGCAACGAGCTCAAACGAGACAAGTTTGTAAAGGTCTACACTTCCACGTTACTCCCTCTATTTTGCCGGCTCCAAACGCAATGAGAGAAATTATTGAATGTGCAGGAGGAAAGATGTCAGAAATAAATACTTTAAAAGATATCCACAGCGTTTTTGTTACAAATTCTCTTCAGGACCGTACTCATAACAGTTACTTAGTATCATGTATGGATGACAAGGAATTTTGGAGTGAGCTTTCCAACAATGGTTATGATGTTTACAATGTTGAACTTATACTTTCGGGTGTTATGAAGCAAGAACTGGAATGGAATCTATATCCTTTTTTAGTGTTAATGTTAAATAAAGTTAATTACTTAGTTAAAGTTTGGACCATGCTTAGATATAGTTATAAACTACCTAATTCTATTTTATATGGCATAGTCAAGCGTTATGCAAGCACATTGGTAGTTATTGAACACAACAATGAGTTATTGACACCATCTTCTTTACATTCAATTTCTGCTGCTAAAGCTATTGGTGGTGATATTACTTGTCTTGTTGCTGGAACAAAGTGCAAACAGGTAGCAGATGCAGTAAGTAAAATTGATGGAGTAAAGAAAGTACTGTTTACAGAGAATAGTATTTACAAAGGCTTTCTACCAGAATGTCTAACACCACTGATCGTTGATCTGCAGCTCAAGATGAAATATACGCATATACTTGCAACATCTTCATCTTTCGCAAAGAATTTACTTCCTCGGATAGCTGGTAAATTAGATGTTGCACCTATTTCTGATATATTAGAGGTTAAGAATGAGAATACATTTGTTAGGACAATTTATGCAGGCAACGCAGTTACAACAATTAAATCTACAGATCCAGTAAAAGTAGTTTCAGTACGGGCTACATCTTTTGAAATGGCAAAAGAAGGACACTCTCCAGCTAGTGTAGAAGAATTGACCGCAAAAGCAACACCATATGATGATGTCATTTGGGAGAGTGCAGAATTAAGTGTGAGTGAACGGCCTGAACTTACAAGCGCAAAGATTGTTGTTTCAGGAGGTCGAGGCATGAAAAGTGGTGAAAATTTTAACTTGTTGTACAAGTTGGCCGACAAATTAAATGCAGCCGTCGGTGCTTCGCGCGCAGCTGTTGATGCTGGTTACGTACCAAACGATATGCAAGTTGGCCAAACAGGAAAAATGGTAGCTCCAGATCTCTATATAGCTGTTGCTATATCGGGAGCTATACAGCATTTAGCTGGTATGAAAGACAGCAAGAGTATCGTTGCTATAAACAAAGATCCAGAGGCTCCAATATTTCAAGTATCGGATTACGGATTGGTTGCTGACTTGTTTAAGGTTGTTCCAGAGTTGACGGAGAAGATTTGA

Transcript

HOLI03032.g4356.t1

Protein

Uniprot

Uniprot term	Description
P13804	Electron transfer flavoprotein subunit alpha, mitochondrial OS=Homo sapiens OX=9606 GN=ETFA PE=1 SV=1
Q2KJE4	Electron transfer flavoprotein subunit alpha, mitochondrial OS=Bos taurus OX=9913 GN=ETFA PE=2 SV=1
Q99LC5	Electron transfer flavoprotein subunit alpha, mitochondrial OS=Mus musculus OX=10090 GN=Etfa PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01012	ETF	Electron transfer flavoprotein domain	Domain	Interproscan
PF00533	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF16770	RTT107_BRCT_5	Regulator of Ty1 transposition protein 107 BRCT domain	Domain	Interproscan
PF00766	ETF_alpha	Electron transfer flavoprotein FAD-binding domain	Domain	Interproscan
PF16589	BRCT_2	BRCT domain, a BRCA1 C-terminus domain	Family	Interproscan
PF12738	PTCB-BRCT	twin BRCT domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014730	Domain	Electron transfer flavoprotein, alpha/beta-subunit, N-terminal	Interproscan
IPR001357	Domain	BRCT domain	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR033947	Domain	Electron transfer flavoprotein, alpha subunit, N-terminal	Interproscan
IPR018206	Conserved_site	Electron transfer flavoprotein subunit alpha, conserved site	Interproscan
IPR001308	Family	Electron transfer flavoprotein alpha subunit/FixB	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR014731	Domain	Electron transfer flavoprotein, alpha subunit, C-terminal	Interproscan
IPR029035	Homologous_superfamily	DHS-like NAD/FAD-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43153	ELECTRON TRANSFER FLAVOPROTEIN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0009055	Molecular Function	electron transfer activity	Interproscan
GO:0033539	Biological Process	fatty acid beta-oxidation using acyl-CoA dehydrogenase	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan