Gene detail

Detailed information of HOLI05813.G11584 in Hydra oligactis

Genomic Location: HOLI05813:1...15190
NR annotation: XP_004211245.2, MFS-type transporter clz9-like [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI05813.g11584.t1

ATGGCAACTGCTAATGGAAAAAGTAGAGCTAATTGGACAGAAGGTCAATTAAAGGAGGCTTTCAAAGCTGTGCAAAACGGAGCATCGCAAAGAGAAGCTGCCATAAAATACAAAATTCCTCGTAGAACTCTACGAAATCACTTGTGTACAGGATCCCAGAAAAAGTCTTTAGGAAGAAAAACTACGCTTTCTAGTGAGCAGGAGCAAAAATTAGTATCAAGAATTTTCAGATTGTCAGACATTGGCATGCCAATAACACCAAAACTCTTGAGGGCATATGTTTTTGAGTTTGTCGAAGCAAACAATATTAATCATTACTTCAATGTCAACGAAAAACTGGCAGGTAGAGACTGGTGTAATAATTTCTTAAGGCGCTACCCAAATATTAGCTGCCGAAAGGCGCAATTTATGAACCCAGCAAGGGCACAAAAAATGAATCCGTTTATTATTAAGGACTATTTCACTAAATTAGAAAAACTAATGTTATTGCATGGCTTTTTTAATACTCCAGAAAGGCTCTACAACATGGATGAAAAAGGAGTCAGGCTTACAGTTCATCACCAACAAGCTGTTTTAGCACAACGGGGAGCGAAGAGAGTTCATCTTGTTGCTCAGGAACATGCTGAAAATGTGACTGTGGTCGGTTGTGCCAATGCTATGGGTTGTGCTATACCTCCAATGGTGTTTTTCAAAGGTATTCGCCTTAAGAGTGAATTCAGTGATGATTTGCCTCCAGGTTCAACTACATTAATGACCGAGAAGGGGTCGATGACCATCGAATCCTTTCTTATATGGCTTGACCACTTCAATAAATATAAAACAAGTGGAGAGACTCTGTTAATTATTGATGGTGCTGCTTCCCATATTAATATTAGAATAGTTGAAAAGGCGGAAAGCTTTGGGATTCACATCTTTTGCTTACCAAACAATACTACCCATGAACTGCAGCCCATGGATAAATCTGTCTTTAAAGCTTTTGAGTCCTATTGGGATGAAGAAGTCATGAAATATTTGAGGACACATCCAGACAGAAGAATAACCAAATCTCTATTTGGCAAACTTTTTACACCAGCATGGAACAAGTGCATGTCAATTGGGAATATTACAAGTGGTTTCAGGGCTACTGGGATTTATCCTTTTAACCCAAATGCCATTCCAGATACTGCTTTTTTGCCAAGTACTTTGACAGAAATCGACGGTGCATCTTTTAACACGTGCCTTACTGAATCTGGTCTTTCAACAACTCCAGTTGTCCAACCAGGACCTTCAACAATTCCAGTCATACAACACGTTCCTTTAGGAGATTCAGTCACCCAACCCAGTCCCTCAACAACATCAGTCGATCAACATGAAATGAATCTTAATGCAAGTTTCAATGATTTAATGCCGAGTCCTGCTAAAAAGAAAAATATGGCTGTGGTTGGTCGCAAAAAAAGTTTTAACTATGTTGCTAAAACCCTGACAAAAGAAGATTTTCAATCTTCTACTTCTAAAGCTGTTGACAATAAGAATAAGGGCAAAGGAAAAGCAAATGTTTCTAAAGACCTAAAAAAGATTATTCTCAATCTTCCACTTCTAAAGCTGTTAACAAAAAGAATAAGGGCAAAGGAAAACCAAGTTCAAAGAAAAATTTTATGCTACTTTGGTGTCTTAATTATACTTTTGGTTGTTTTATTATGGCTTGTGATTGCAAGAAAAAAAAAAGCCAAACAGAGTGGGGCTGCATTAAGCAATAATCCAGTAAAAGCACGTTTTCGTAAAAGAGATCGTATTCGATTTTATACAACAAAAATGCTTCGAAAGGTTAAACAGTTTAAAGAAGATGTTCTACCTGGTGCTGAACAAGAAGGGAAATCTATTGGCAAAAGACGATCTAAGCGAAGATCAAGCTCCAATTTAAGAATGCTTGCTAGTAATTTTTTACAATTTAACTCTATTGATTATGAAAGAAAAGTTAGAGAGCCTCCAGCTGCATTATTAGAAGCAGATCTTTCAGAGGGCACTGGAAATGAAACTCATTTACCTGCAGAAGTCATTATATTTGGAAATTTTGAAAAGCCTTTGTTTTTTGCATTATGCAAGCATGTTGTTTCTATGACAGCTTCTGCTGGAAAACTTATTTTCAAACCAGGACAG

Transcript

HOLI05813.g11584.t1

Protein

Uniprot

Gene family

Uniprot term	Description
Q5RDS0	Patatin-like phospholipase domain-containing protein 6 OS=Pongo abelii OX=9601 GN=PNPLA6 PE=2 SV=1
Q8IY17	Patatin-like phospholipase domain-containing protein 6 OS=Homo sapiens OX=9606 GN=PNPLA6 PE=1 SV=3

Gene family	Subfamily
Transcription Factors Family	HTH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03184	DDE_1	DDE superfamily endonuclease	Family	Interproscan
PF05225	HTH_psq	helix-turn-helix, Psq domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050863	Family	Centromere and Transposable Element-Derived Protein	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR004875	Domain	DDE superfamily endonuclease domain	Interproscan
IPR006600	Domain	HTH CenpB-type DNA-binding domain	Interproscan
IPR007889	Domain	DNA binding HTH domain, Psq-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19303	TRANSPOSON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14284	NXF, TAP, MEX67; nuclear RNA export factor	-	Ribosome biogenesis	ko03009	deepkoala