Gene detail

Detailed information of HOLI07065.G28443 in Hydra oligactis

Genomic Location: HOLI07065:10726...21435
NR annotation: XP_047135168.1, low-density lipoprotein receptor-related protein 6-like [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

HOLI07065.g28443.t1

ATGGAAAGACAACGCTATCAAAAAACACGATACACAATTCAGGATGCTGTAAACTTTGTTCTTGAGCCTGGTTCTGATTCAGAATTATCAGAACTTTCTGAATCCTCGGATGATGAAAATGAAGTTGGCCAACCTAAAATTGATTGTGATGAAAAAGAAGAGATAACTGATAACGAAGAAATCTGTGGAGGTGAAGATCAAAATATATCAAATTTTGAGTCAGTAAGAAAAAGAAAAAAACCACACGAGTTTCGGTGGCGATCTACTGAACCGCAATTAATCGATTCAGAATTTATGGGAGAAAATTTCACATTAGCCCCGGATAATTTTAATGAACTTACACCTTTTGATTATTATTCCCAGTTCTGGACAAAAGAAATAACAGAACTGATTGTAGAACAAACAAATCTATATTGTACCCAACTTTCCGGTAAGTCAATAATCACAAATGTTAATGAAATGGATCAGTTTATGGGAATGCAAATGTTAATGGGTATTTTAAAGCTGCCAAGCTACCCTATGTACTGGATGAATGAAATCAGAATTAATACAATTGCTGATGTTATGCCAATTAATAGGTATAAAGCGTTAAGAAGATATATTCATGTAGTTGACAATTCAAAAAAAGATGAAGCAGATAATAAAAATGATAAACTTTTCAAAATTAGACCTATATTAGAGATGGCTAATTTAGATGGTTCGTCAAGATATCTTTTAATGAAAGGAATTCATCCAACTAGTTGTTCTATTGATTATAAAACAAACAACATTTATTGGGTTCATCAAAATTTACAAGACTCTTCTATTGAATTCTATGATTTTAAAACTTCAAAACGTGTTTTAGTTTATAGTGGTTTGCCTCCAACTCACGCATTGCTTGTATTTCAAGACAGTCTTATTGTTGGAAGTCACGGCGACTCTACATCAATAAAAATGTTATCAATGATGGGTAAAGGTCAAGTTATTGATTTAATAAAAGACACTCCTTTTATTCATGACATAAAAATTATTCATAATGGTATTCAACTAGGATCAAATTTGTGCTCTAGAAATAATGGTGGATGCGAGCATCTTTGTTTTGCTTTAAGTACAACTGCTAGACTTTGCAGTTGTGCTACTCATTATACACTAAATGAAGATGGTTGTAGTTGTTTTCAACCTGAACTTTTTCTAATTTTTAGCTATGAGTTTTCATTTGCGCGTGTGGTTTTTCAGGATTCAGTTCCTGAGGCAGTGTTGCCTATTCATACTCAGGTAAAGTCTTCAGCTATTGCTTTTGACGAGGTTCGTAGTTTTTTATATTGGTTAGATTCCAGTACAACTTCAGTATCAAGGGTTCATCAAAATGGAAGTGGTTATGAAAATATAAAGCTTTTTTATTCTCATTCCAGTATTTTATCGGATCCATATGACTTTGCATTGGATCAGTTTAGTAACTCTATATATTGGACTGATAAATATGATAATACCATAAAGTTTATCAACTTATGTACAAAAAAAAATGGAACAATTCTCGAGGAGACTTCGTATTTTCCACGCAAAATAACTGTTTTTCCTGAACATGGCAGTTTGTTTTGGATCAATGAAGATATAAACAGTCCAAAATATGGCATTATGTTGACTAAAATATCAGGTGTTTACTCTACAACTTTGCTGAAAATTAGAAAATTTTCTGTAGTTGACATGGCTATAGATTTTATAGGTCATCGTCTTTTCTGGTTAGACACTGACTCTATACATAGCGTTTCACTATCTGTTTCTAAAGAAAATATAACAAGTCAAACTTACCCTTTCCATGGTAAATACGAGCACCTGTCAAGTTTAGTTGTTGTTAATTTAACACGAGGGAAAGATTCTCATCCTTGCAGCATTAACAATGGAGGTTGCAGTGATATTTGTACTATCAACTATCAAATTGACCATTCACCTTTGAAAAGTTCACCGATGCCTTTGTGTGCATGCCCATTGTTTCAATCTCTTGCTGATAGTAACATATGTAATGTTCATGAACACTGCAACAGTGATGAATTTTTTTGTAAATCTGACAGTCTATGCATAAATATGTCTAAAAAGTGTGACTACAAAGAAGACTGCACAAATGGCGAAGACGAAATATGTTGTAAGTAA

Transcript

HOLI07065.g28443.t1

Protein

Uniprot

Uniprot term	Description
Q9JI18	Low-density lipoprotein receptor-related protein 1B OS=Mus musculus OX=10090 GN=Lrp1b PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13843	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051221	Family	Low-density lipoprotein receptor-related	Interproscan
IPR029526	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22722	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006898	Biological Process	receptor-mediated endocytosis	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:0042562	Molecular Function	hormone binding	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan