Detailed information of HSymV2.0_g01.00684_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_1:12603711...12611603
NR annotation: XP_002166122.1, U6 snRNA-associated Sm-like protein LSm6 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P62312U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens OX=9606 GN=LSM6 PE=1 SV=1
P62313U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus OX=10090 GN=Lsm6 PE=1 SV=1
Q9M1Z3Sm-like protein LSM6A OS=Arabidopsis thaliana OX=3702 GN=LSM6A PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02970TBCATubulin binding cofactor ADomainInterproscan
PF01423LSMLSM domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016487FamilySm-like protein Lsm6/SmFInterproscan
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR004226FamilyTubulin binding cofactor AInterproscan
IPR047575DomainSm domainInterproscan
IPR036126Homologous_superfamilyTubulin binding cofactor A superfamilyInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-FInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005688Cellular ComponentU6 snRNPInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0005732Cellular Componentsno(s)RNA-containing ribonucleoprotein complexInterproscan
GO:0030490Biological Processmaturation of SSU-rRNAInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0007021Biological Processtubulin complex assemblyInterproscan
GO:0007023Biological Processpost-chaperonin tubulin folding pathwayInterproscan
GO:0048487Molecular Functionbeta-tubulin bindingInterproscan

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