Detailed information of HSymV2.0_g01.01250_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_1:21782879...21784516
NR annotation: XP_020621967.1, protocadherin Fat 4-like isoform X7 [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12662cEGFComplement Clr-like EGF-likeDomainInterproscan
PF19028TSP1_spondinSpondin-like TSP1 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR026823DomainComplement Clr-like EGF domainInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR044004DomainSpondin-like TSP1 domainInterproscan
IPR051505FamilyC-type lectin domain-containing proteinInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14789CHONDROLECTIN VARIANT CHODLFDELTAE.Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0009897Cellular Componentexternal side of plasma membraneInterproscan
GO:0016477Biological Processcell migrationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0050840Molecular Functionextracellular matrix bindingInterproscan
GO:1990430Molecular Functionextracellular matrix protein bindingInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan

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