Gene detail

Detailed information of HSymV2.0_g02.02226_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_2:431650...432879
NR annotation: MBQ4874936.1, diaminopimelate decarboxylase [Rickettsiaceae bacterium H1]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
O67262	Diaminopimelate decarboxylase OS=Aquifex aeolicus (strain VF5) OX=224324 GN=lysA PE=1 SV=1
P44316	Diaminopimelate decarboxylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=lysA PE=3 SV=1
Q9ZME5	Diaminopimelate decarboxylase OS=Helicobacter pylori (strain J99 / ATCC 700824) OX=85963 GN=lysA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02784	Orn_Arg_deC_N	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	Domain	Interproscan
PF00278	Orn_DAP_Arg_deC	Pyridoxal-dependent decarboxylase, C-terminal sheet domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029066	Homologous_superfamily	PLP-binding barrel	Interproscan
IPR000183	Family	Ornithine/DAP/Arg decarboxylase	Interproscan
IPR002986	Family	Diaminopimelate decarboxylase, LysA	Interproscan
IPR022644	Domain	Orn/DAP/Arg decarboxylase 2, N-terminal	Interproscan
IPR022643	Domain	Orn/DAP/Arg decarboxylase 2, C-terminal	Interproscan
IPR009006	Homologous_superfamily	Alanine racemase/group IV decarboxylase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43727	DIAMINOPIMELATE DECARBOXYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0008836	Molecular Function	diaminopimelate decarboxylase activity	Interproscan
GO:0009089	Biological Process	lysine biosynthetic process via diaminopimelate	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01586	lysA; diaminopimelate decarboxylase	EC:4.1.1.20	D-Amino acid metabolism	ko00470	deepkoala