Gene detail

Detailed information of HSymV2.0_g02.02560_t1 in Hydractinia symbiolongicarpus

Genomic Location: HiC_scaffold_2:1149436...1150656
NR annotation: MBQ4875257.1, serine--tRNA ligase [Rickettsiaceae bacterium H1]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q3YS14	Serine--tRNA ligase OS=Ehrlichia canis (strain Jake) OX=269484 GN=serS PE=3 SV=1
Q5FGY8	Serine--tRNA ligase OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=serS PE=3 SV=1
B3CQ06	Serine--tRNA ligase OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) OX=570417 GN=serS PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00587	tRNA-synt_2b	tRNA synthetase class II core domain (G, H, P, S and T)	Domain	Interproscan
PF02403	Seryl_tRNA_N	Seryl-tRNA synthetase N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042103	Homologous_superfamily	Serine-tRNA synthetase, type1, N-terminal domain superfamily	Interproscan
IPR002317	Family	Serine-tRNA ligase, type1	Interproscan
IPR045864	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR010978	Homologous_superfamily	Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm	Interproscan
IPR002314	Domain	Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)	Interproscan
IPR015866	Domain	Serine-tRNA synthetase, type1, N-terminal	Interproscan
IPR033729	Domain	Serine-tRNA ligase catalytic core domain	Interproscan
IPR006195	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43697	SERYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004828	Molecular Function	serine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006434	Biological Process	seryl-tRNA aminoacylation	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01875	SARS, serS; seryl-tRNA synthetase	EC:6.1.1.11	Transfer RNA biogenesis	ko03016	deepkoala